What is omics-skills?

A collection of coding-agent tools for bioinformatics, finding scientific papers, scientific writing, and data visualization. Bioinformatics uses software to analyze biological data.

Analyzing biological data, discovering literature, preparing scientific text, and creating data visualizations.

It brings several research-focused workflows together for scientific computing tasks. This can reduce the need to assemble separate instructions for each type of analysis.

omics-skills — Plugin for Claude Code by fmschulz

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Clone the repo

git clone --depth 1 https://github.com/fmschulz/omics-skills

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

README.md

[![agentmods](https://agentmods.dev/badge/plugins/fmschulz/omics-skills/omics-skills/github.svg)](https://agentmods.dev/plugins/fmschulz/omics-skills/omics-skills)

Your own site

<a href="https://agentmods.dev/plugins/fmschulz/omics-skills/omics-skills"><img src="https://agentmods.dev/badge/plugins/fmschulz/omics-skills/omics-skills/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

Your own site · 80×15

<a href="https://agentmods.dev/plugins/fmschulz/omics-skills/omics-skills"><img src="https://agentmods.dev/badge/plugins/fmschulz/omics-skills/omics-skills.svg" alt="Reviewed on agentmods" width="80" height="20"></a>

Per session not measured What this adds to a session before it is invoked.

When invoked not measured The manifest loads nothing itself; its 34 skills, 4 agents cost 1,570 tokens a session between them.

Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.

Origin original No closer match found in the catalogue.

Security

Grade A, and why

omics-skills scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude-plugin/plugin.json · 21 lines

What it actually says

{
  "name": "omics-skills",
  "displayName": "Omics Skills",
  "description": "Bioinformatics, literature discovery, scientific writing, and data visualization agents and skills for Claude Code and Cowork.",
  "version": "1.7.1",
  "author": {
    "name": "Frederik Schulz"
  },
  "homepage": "https://fmschulz.github.io/omics-skills/",
  "repository": "https://github.com/fmschulz/omics-skills",
  "license": "MIT",
  "keywords": [
    "bioinformatics",
    "omics",
    "genomics",
    "literature",
    "scientific-writing",
    "data-visualization"
  ]
}

Contents

What it installs

The manifest is a name and a version. 34 skills, 4 agents travel with it, and installing the plugin installs all of them — 1,570 tokens a session between them. Each is measured on its own page, and each can be installed alone.

Files

What ships with it

1 file beside plugin.json in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

marketplace.json 562 B

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

1mo ago Changed 282d93f1411b
1mo ago First seen · 21 lines scan A bb6559bc4225

Subscribe to this mod's changes

omics-skills is a plugin published in the GitHub repository fmschulz/omics-skills (11 stars, last pushed 23d ago), licensed MIT. Its token cost is not measured: this kind of file is read by the harness, not the model. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

Claude Code Research Scientific agent-skills ai-agents bioinformatics claude-skills codex-cli

research

Reviewable ML research: literature, planning, methodology review, bounded runs, sweeps, verification, ablations, retrospectives, Kaggle, and setup.

Borda/AI-Rig · not measured

scholion

Local second-opinion support for individuals and clinicians — genome (VCF), laboratory history, prescriptions and wearables. One person per container and per assistant conversation; the tools use the active container and cannot switch it. Findings carry their evidence level; lower-evidence findings reach the assistant.

CrossRead/scholion · not measured

omics-skills

Getting it into your agent

Wrote this? Show the measurements

Grade A, and why

Nothing flagged

What it actually says

What it installs

What ships with it

What this file has done since we first saw it

Other plugins, from other repositories

research

scholion

biodiscovery-skills

humanizer

claude-plugins-official marketplace

nextjs