beautiful-data-viz

beautiful-data-viz is a skill for Claude Code from fmschulz/omics-skills. It costs 71 tokens per session (1,616 once invoked), scanned A, original, MIT.

A set of practices for making clear, publication-quality static charts with Matplotlib or Seaborn, two Python tools for creating graphs. It focuses on readable labels, accessible colors, compact layouts, and showing the data clearly.

In plain words
What is it for?
Creating scientific figures for papers, notebooks, and presentations; choosing suitable chart types; improving labels and layouts; and making visualizations easier to interpret.
Why use it?
Charts can be difficult to read when they use poor scales, clutter, or colors that are hard to distinguish. These guidelines help match the chart type and styling to the message.

Skill for Claude Code

Written for Claude Code: argument-hint in frontmatter.

Part of the omics-skills plugin — 34 skills, 4 agents shipped together

Good fit Creating scientific figures for papers, notebooks, and presentations; choosing suitable chart types; improving labels and layouts; and making visualizations easier to interpret.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/fmschulz/omics-skills/beautiful-data-viz
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add fmschulz/omics-skills --skill beautiful-data-viz
Clone the repo
git clone --depth 1 https://github.com/fmschulz/omics-skills

Made for: Claude Code.

Or install omics-skills, the plugin that ships this one along with the rest of its 34 skills, 4 agents.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for beautiful-data-viz

README.md
[![agentmods](https://agentmods.dev/badge/skills/fmschulz/omics-skills/beautiful-data-viz/github.svg)](https://agentmods.dev/skills/fmschulz/omics-skills/beautiful-data-viz)
Your own site
<a href="https://agentmods.dev/skills/fmschulz/omics-skills/beautiful-data-viz"><img src="https://agentmods.dev/badge/skills/fmschulz/omics-skills/beautiful-data-viz/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for beautiful-data-viz

Your own site · 80×15
<a href="https://agentmods.dev/skills/fmschulz/omics-skills/beautiful-data-viz"><img src="https://agentmods.dev/badge/skills/fmschulz/omics-skills/beautiful-data-viz.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 71 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,616 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector warn 7 Sept 2026
SkillSpector: 1 finding, up to high

These are SkillSpector’s own severities. On a checked sample its high-severity flags on skills were ~96% false positives — a documented command, a public API, a “never do X” rule — so we show them as a caution to read, not a verdict. Why →

  • high Memory Poisoning · line 37
    Skill manipulates agent memory, state, or stored context. Memory corruption can alter personality, override safety rules, or cause unpredictable behavior.
    Fix: Protect agent memory and state from modification by untrusted content. Use read-only memory for critical instructions and validate all state changes.
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00071 $0.01616
Opus 5.5 $0.00028 $0.00646
Sonnet 5.5 $0.00014 $0.00323
Haiku 4.5 $0.00007 $0.00162

Measured 23d ago against content hash 9d0feb76029f, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

beautiful-data-viz scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 23d ago.

The scan reads SKILL.md. This mod also ships 2 executable files (assets/beautiful_style.py, scripts/export_fixture.py), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/beautiful-data-viz/SKILL.md · 100 lines

How it starts

The opening of the file, as written. The whole thing — 100 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Beautiful Data Viz

The pack's shared rules for any data visual, whatever the library or medium. Show the data, remove decoration, label directly, and add only the context the reader needs. Other skills that draw figures (/plotly-dashboard-skill, /notebooks, the bio-* reporting skills) follow these rules and add only what their medium needs.

Instructions

  1. Greyscale first. Draw every mark in neutral greys by default. Add color only when it encodes information:

    • a category the reader must tell apart,
    • the one highlighted finding (one accent color; everything else stays grey),
    • an ordered or signed quantity (sequential or diverging scale).

    Use colorblind-safe colors, never make color the only encoding (add position, shape, line style, or a direct label), and keep the figure readable in greyscale print. When color is warranted, pick it from references/palettes.md.

  2. Clarify the message, comparison context, audience, and medium (notebook, paper, slides, web). One or two values read better as a sentence; a short lookup list reads better as a table.

  3. Choose the simplest chart that answers the question: horizontal bars or dot plots for ranked categories, small multiples instead of more than four overlaid series or a dual axis, slopegraphs for before/after, sparklines for compact trends.

  4. Remove chart junk: no 3D, no pie charts unless asked for, no decorative borders, no heavy grids, no gradient fills, no dual y-axes.

  5. Label series directly. Keep a legend only when direct labels would collide with the data or each other.

  6. Manuscript figures carry no in-plot title or subtitle; axis labels, direct labels, panel letters, and the caption do that work. The caption sits below the figure: in a notebook the figure cell comes first and the caption cell follows it.

  7. Apply the style for the medium:

    • matplotlib or seaborn: set_beautiful_style(...) from assets/beautiful_style.py. It sets a grey series cycle with distinct line styles and returns a config whose accent is a colorblind-safe highlight color for the current background.
    • R / ggplot2: theme_classic() or theme_minimal(), scale_colour_grey() for neutral series, and scale_colour_manual() to give only the finding the accent.
    • Plotly or Dash: a registered template with a grey colorway and the accent added per trace; see /plotly-dashboard-skill references/style.md.
    • HTML / SVG: define neutral greys and one accent as CSS custom properties and redefine them for dark mode.
  8. Check the result at the target size: run the references/checklist.md pass, and view a greyscale copy to confirm every encoding survives (Image.open(path).convert("L") with Pillow).

  9. Reproduce figures from a pinned environment: the project's pixi.toml (this skill ships one in pixi.toml), or a PEP 723 script run with uv run --script, as in scripts/export_fixture.py.

Read the full file on GitHub · 100 lines

Files

What ships with it

8 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 23d ago Changed · -14 lines · +34 tokens per session 9d0feb76029f
  2. 1mo ago Changed 7cfab0efb94e
  3. 1mo ago First seen · 114 lines · 37 tokens per session scan A 59c704e5bc5d

Subscribe to this mod's changes

beautiful-data-viz is a skill published in the GitHub repository fmschulz/omics-skills (11 stars, last pushed 23d ago), licensed MIT. It adds 71 tokens to every session and 1,616 once invoked, about $0.0003 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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