1,944 tagged bioinformatics, measured the same way as everything else here.
Browse within: computational-biology 429genomics 320Cheminformatics 254openclaw 247drug-discovery 243LLM 211cancer-genomics 208literature-review 199ai4science 197biology 196claude-plugin 194data-analysis 192ai-scientist 191chemoinformatics 177
K-Dense-AI/scientific-agent-skills
Skill Claude CodeCodex
Queries and downloads public cancer imaging data from NCI Imaging Data Commons. Supports IDC collection discovery, DICOM access, radiology (CT, MR, PET) and pathology AI datasets, metadata SQL, visualization, licensing, and citations. Uses public metadata and download routes without authentication; optional BigQuery…
aipoch/medical-research-skills
Skill Claude CodeCodex
Use this skill to run GSVA or ssGSEA pathway-level differential analysis from a bulk expression matrix and a sample group file, then generate a heatmap from the saved GSVA result object. Trigger keywords: GSVA, ssGSEA, pathway enrichment, KEGG pathway analysis, MSigDB. NOT for: gene-level differential expression…
Skill Codex
A workflow for turning books about concepts, theories, or analysis methods into reusable task instructions. It scans document images, links claims to evidence, and checks the result through human review.
Skill Claude Code needs its repo
Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration, and poster-specific best practices for visual communication.
AgentTeam-TaichuAI/ScienceClaw
Skill Claude CodeCodex
Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', or requests to produce professional documents with formatting like tables of contents, headings, page numbers, or letterheads. Also use when…
Skill Claude CodeCodex
A research workflow that turns structured biology research information into a complete manuscript plan.
Skill Claude CodeCodex
Use for any task involving the decoupler library — inferring biological activity/enrichment scores from omics data (bulk, single-cell, spatial). Triggers on estimating transcription factor (TF) activity, pathway activity, or gene-set enrichment from an AnnData/DataFrame; running ulm, mlm, ora, gsea, gsva, aucell…
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Reconstruct ancestral states at internal phylogenetic nodes for sequences (PAML codeml, IQ-TREE --ancestral, GRASP, FastML), discrete traits (corHMM hidden-rate Markov, ape::ace, phytools::make.simmap stochastic mapping, BayesTraits), and continuous traits (phytools::fastAnc, geiger Brownian/OU, RPANDA). Use when…
Skill Claude CodeCodex
Query visual scientific figure references, show candidates for human preference selection, export selected reference bundles, and guide plotting agents from human-selected visual examples to code action.
Skill Claude CodeCodex
Load when assigning cell-type labels to a clustered scRNA AnnData via marker dictionaries, CellTypist, PopV, KNNPredict, SingleR, scmap, SCSA, or a manual cluster-to-label map. Skip when ranking marker genes per cluster (use sc-markers); condition-vs-control DE (use sc-de).
Skill Claude CodeCodex
Review repeated paired receptor-pMHC observations and metadata synonyms within and across VDJdb publications, preserving distinct experiments and reports. Use for a corpus audit or a submission that may overlap existing records.
Skill Claude CodeCodex
Computational chemistry workflow guide for DeepChem, PySCF, RDKit, assay-table normalization, PDBbind-style structure datasets, QSAR and structure benchmarks, DrugBank lookup, ligand-only and structure-aware affinity prediction, ADMET triage, bioactivity prediction, virtual screening, and docking follow-up.
Skill Claude CodeCodex
Patsnap Patent Research MCP for AI agents. Performs novelty searches, invention freedom-to-operate reviews, and design-patent FTO reviews from technical text, claims, disclosures, or product images. Use for defined novelty and infringement-risk research workflows, including asynchronous task retrieval; do not use it…
Skill Claude CodeCodex
Author figures in Quarto documents using the quarto-livefigures extension — editable, version-controlled figure sources (Excalidraw, Vega-Lite, Graphviz, PlantUML, and 14 more) rendered at build time. Use when creating or editing diagrams, charts, schemas, or timing figures in a Quarto project, when the user asks for…
Skill Claude CodeCodex
Prepares, shares, inspects, or explains the standalone Motif for Claude Science artifact, including sequence inventories, alignments, traces, and browser review.
K-Dense-AI/drug-discovery-agent-skills
Skill Claude Code
Analyze and engineer protein glycosylation. Scan sequences for canonical N-glycosylation sequons (N-X-S/T with X not proline, including overlapping sites), predict O-GalNAc hotspots, read glycan notation, and reach the curated external tooling (NetNGlyc, NetOGlyc, GlycoShield, GlycoWorkbench, GlyTouCan, GlyConnect).…
Skill Claude CodeCodex
Single-cell analysis pipeline covering scRNA-seq, snRNA-seq, and CyTOF (mass cytometry) — QC, normalization, integration, clustering, annotation, differential expression, trajectory, cell communication, and TF activity inference.
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
End-to-end EHR predictive modeling pipeline with PyHealth, covering dataset loading, task definition, model training, evaluation, calibration, and clinical interpretation.
lynnlangit/precision-medicine-mcp
Skill Claude CodeCodex
Expert guide for testing bioinformatics MCP servers. Covers pytest, DRYRUN modes, and PatientOne simulation scenarios.
Skill Claude CodeCodex
Use when answering biomedical research questions that need source-backed evidence from local MCP servers, including gene, disease, drug, variant, phenotype, study, or clinical-trial questions.
HolobiomicsLab/asb-skill-collections
Skill Claude CodeCodex
Use when before running HiC-Pro or similar multi-stage pipelines on a new system or environment, especially when dependency installation is not automated (e.g., not in a conda environment or container).
Skill Claude CodeCodex
Reconstruct ancestral states at internal phylogenetic nodes for sequences (PAML codeml, IQ-TREE --ancestral, GRASP, FastML), discrete traits (corHMM hidden-rate Markov, ape::ace, phytools::make.simmap stochastic mapping, BayesTraits), and continuous traits (phytools::fastAnc, geiger Brownian/OU, RPANDA). Use when…
Hongda-Zhao/bio-gene-to-reference-tree
Skill Claude CodeCodex
Orchestrate this repository's end-to-end auditable protein or nucleotide gene-tree workflow. Use when a request spans several stages or the active stage is unclear; select one task adapter, then follow the canonical Skill and its review gates.
poplarity/dsh-science-workbench
Skill Claude CodeCodex needs its repo
A set of rules for running reproducible bioinformatics analyses, which study biological data with software. It uses small self-contained scripts, recorded inputs and outputs, environment details, and version history so results can be repeated.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: