AI-Powered Bioinformatics Research Assistant. Built on OpenClaw.
This repository also configures its own agents. See what BioClaw tells them →
Skill Claude Code
Browse the web for any task — research topics, read articles, interact with web apps, fill forms, take screenshots, extract data, and test web pages. Use whenever a browser would be useful, not just when the user explicitly asks.
Skill Claude CodeCodex
ATAC-seq processing with assay QC, MACS3 peak calling, consensus peak matrices, differential accessibility, and motif or footprint follow-up.
Skill Claude CodeCodex
A workflow for designing the set of analysis methods used in a biology study.
Skill Claude CodeCodex
A workflow for finding datasets and matching them to a biology research task.
Skill Claude CodeCodex
Skill "bio-figure-design" from Runchuan-BU/BioClaw, covering bio-figure-design, purpose, input format, workflow and step 6.1: design figure 1.
Skill Claude CodeCodex
A review checkpoint for a biology research workflow where a person checks the work and provides feedback.
Skill Claude CodeCodex
Skill "bio-innovation-check" from Runchuan-BU/BioClaw, covering bio-innovation-check, purpose, input format, workflow and step 1.1: topic expansion.
Skill Claude CodeCodex
A research workflow that turns structured biology research information into a complete manuscript plan.
Skill Claude CodeCodex
A refinement process that reviews a manuscript from three reviewer perspectives and repeats improvements. Peer reviewers are researchers who assess a paper before publication.
Skill Claude CodeCodex
Skill "bio-manuscript-text" from Runchuan-BU/BioClaw, covering bio-manuscript-text, purpose, input format, workflow and step 7.1: write the introduction.
Skill Claude CodeCodex
A step for designing a system of metrics, meaning clearly defined measures used to judge or compare results. The description only identifies this as step 4 of a larger process.
Skill Claude CodeCodex
Skill "bio-ppt-generate" from Runchuan-BU/BioClaw, covering bio-ppt-generate, purpose, input format, suggested slide order and output format.
Skill Claude CodeCodex
Skill "bio-task-system" from Runchuan-BU/BioClaw, covering bio-task-system, purpose, input format, workflow and step 2.1: task taxonomy search.
Skill Claude CodeCodex
Biology research tools reference. Always available inside agent containers.
Skill Claude CodeCodex
Run BLAST sequence similarity searches. Use when the user asks to BLAST a sequence, find similar sequences, identify a gene/protein, or do homology search. Triggers on "blast", "sequence similarity", "homology", "identify sequence".
Skill Claude CodeCodex
Automated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation.
Skill Claude CodeCodex
ChIP-seq peak calling and downstream interpretation with MACS3, signal track export, annotation, motif analysis, and differential binding review.
Skill Claude CodeCodex
Bulk transcriptomics differential expression with count-aware modeling, design validation, contrast handling, thresholded exports, and publication-ready DE figures.
Skill Claude CodeCodex
Shotgun metagenomics workflow with host-depletion-aware QC, taxonomic profiling, functional profiling, AMR follow-up, and reproducible community output tables.
Skill Claude CodeCodex
Mass spectrometry proteomics QC, quantification, comparative analysis, and export for DDA, DIA, and protein-level result tables.
Skill Claude CodeCodex
Search PubMed for scientific literature. Use when the user asks to find papers, search literature, look up research, find publications, or asks about recent studies. Triggers on "pubmed", "papers", "literature", "publications", "research on", "studies about".
Skill Claude CodeCodex
Query AlphaFold protein structure predictions. Use when user asks about protein structure, 3D structure, protein folding, or structure prediction. Triggers on "alphafold", "protein structure", "3D structure", "folding", "pLDDT", "structure prediction".
Skill Claude CodeCodex
Query ClinVar for clinical variant significance. Use when user asks about variant pathogenicity, genetic variants, clinical significance, or disease-causing mutations. Triggers on "clinvar", "pathogenic", "variant significance", "clinical significance", "disease variant", "mutation pathogenicity".
Skill Claude CodeCodex
Query Ensembl for genomic data. Use when user asks about gene coordinates, genomic sequences, variants, gene structure, exons, transcripts, or species comparison. Triggers on "ensembl", "gene coordinates", "genomic location", "exon", "transcript", "variant location", "rsid", "rs number".
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: