proteomics

proteomics is a skill for Claude Code, Codex from Runchuan-BU/BioClaw. It costs 30 tokens per session (800 once invoked), scanned A, original, no licence file.

A workflow for checking and analysing protein measurements from mass spectrometry, a method that identifies and measures molecules by their mass.

In plain words
What is it for?
Use it with DDA or DIA experiments and protein-level result tables for quality control, quantification, comparative analysis, and export.
Why use it?
It helps organise quality checks, measurements, comparisons, and exported results across common proteomics experiment types.

Skill for Claude CodeCodex

Which agent this was written for is unclear — body not stored (licence); the path alone says nothing.

Good fit Use it with DDA or DIA experiments and protein-level result tables for quality control, quantification, comparative analysis, and export.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/runchuan-bu/bioclaw/proteomics
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add Runchuan-BU/BioClaw --skill proteomics
Clone the repo
git clone --depth 1 https://github.com/Runchuan-BU/BioClaw

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for proteomics

README.md
[![agentmods](https://agentmods.dev/badge/skills/runchuan-bu/bioclaw/proteomics/github.svg)](https://agentmods.dev/skills/runchuan-bu/bioclaw/proteomics)
Your own site
<a href="https://agentmods.dev/skills/runchuan-bu/bioclaw/proteomics"><img src="https://agentmods.dev/badge/skills/runchuan-bu/bioclaw/proteomics/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for proteomics

Your own site · 80×15
<a href="https://agentmods.dev/skills/runchuan-bu/bioclaw/proteomics"><img src="https://agentmods.dev/badge/skills/runchuan-bu/bioclaw/proteomics.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 30 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 800 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00030 $0.00800
Opus 5 $0.00015 $0.00400
Sonnet 5 $0.00006 $0.00160
Haiku 4.5 $0.00003 $0.00080

Measured 10d ago against content hash d1ad483c7f60, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-10, from the pricing page.

Security

Grade A, and why

proteomics scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 10d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

container/skills/proteomics/SKILL.md · 140 lines

The source is not reproduced here

A licence we could not identify

The repository carries a LICENSE file, but it is custom or dual enough that GitHub cannot name it and neither can this catalogue. Unknown terms are not permission, so the body is not copied here. Read the licence at the source and decide for yourself.

Read it on GitHub

Files

What ships with it

2 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 10d ago First seen · 140 lines · 30 tokens per session scan A d1ad483c7f60

Subscribe to this mod's changes

proteomics is a skill published in the GitHub repository Runchuan-BU/BioClaw (407 stars, last pushed 17d ago), with no licence file. It adds 30 tokens to every session and 800 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

Other skills, from other repositories

scrna-orchestrator

Local Scanpy pipeline for single-cell RNA-seq QC, optional doublet detection, clustering, marker discovery, optional CellTypist annotation, optional latent downstream mode from integrated.h5ad/Xscvi, and optional dataset-level plus within-cluster contrastive marker analysis from raw-count .h5ad or 10x Matrix Market…

ClawBio/ClawBio · 74 tokens

scrna-embedding

Local scVI/scANVI-based single-cell latent embedding and batch-aware integration from raw-count .h5ad or 10x Matrix Market input, with stable integrated AnnData export for downstream latent analysis.

ClawBio/ClawBio · 46 tokens

knowledge-graph-tools

Drug-discovery knowledge-graph workflow guide for assembling drug-target-disease-pathway relationship graphs from OpenTargets GraphQL, ChEMBL REST, STRING PPI, and Reactome pathway APIs, then running hub detection, shortest-path queries, and neighborhood expansion with networkx. Use when the user asks to build, query…

DrugClaw/DrugClaw · 94 tokens

medical-data-tools

Medical data workflow guide for DICOM metadata inspection and basic de-identification, physiological signal analysis with NeuroKit2, and cohort-table profiling for clinical research datasets. Use when the user asks to inspect imaging metadata, summarize ECG/PPG/EDA/RSP/EMG signals, or profile tabular medical datasets…

DrugClaw/DrugClaw · 75 tokens

pharma-ml-tools

Pharmaceutical machine-learning workflow guide for library profiling, molecular featurization, benchmark dataset fetch, medicinal-chemistry filtering, and optional pose-generation handoff. Use when the user asks for datamol, molfeat, PyTDC, medchem, compound-library triage, dataset preparation, or chemistry-ML…

DrugClaw/DrugClaw · 77 tokens

omics-tools

Omics and single-cell workflow guide for AnnData, Scanpy-style dataset profiling, PyDESeq2-oriented count checks, pysam alignment inspection, and pyOpenMS mass-spectrometry summaries. Use when the user asks to inspect h5ad files, summarize BAM regions, profile omics count tables, or inventory mzML experiments before…

DrugClaw/DrugClaw · 74 tokens