pymol skills

55 tagged pymol, measured the same way as everything else here.

Browse within: bioinformatics 52openclaw 52pubmed 52

add-gmail

01

Runchuan-BU/BioClaw

Skill Claude CodeCodex

Add Gmail integration to BioClaw. Can be configured as a tool (agent reads/sends emails when triggered from WhatsApp) or as a full channel (emails can trigger the agent, schedule tasks, and receive replies). Guides through GCP OAuth setup and implements the integration.

405 8d ago A 60 tokens

add-telegram

02

Runchuan-BU/BioClaw

Skill Claude CodeCodex

Add Telegram as a channel. Can replace WhatsApp entirely or run alongside it. Also configurable as a control-only channel (triggers actions) or passive channel (receives notifications only).

405 8d ago A 41 tokens

gromacs-md

04

Ling-MD/md-agent-skills

Skill Claude CodeCodex

Use when working on classical biomolecular molecular dynamics with GROMACS: system setup, pdb2gmx/topology preparation, ligand parameterization, solvation and ions, energy minimization, NVT/NPT equilibration, production MD, trajectory analysis, MM/PBSA-style post-processing, .mdp parameter review, GROMACS command…

4 2mo ago A 86 tokens original MIT

Ling-MD/md-agent-skills

Skill Claude CodeCodex

Use when creating, improving, or troubleshooting publication-ready molecular structure figures with PyMOL: protein cartoons, ligand binding pockets, surfaces, electrostatic-style views, hydrogen bonds, labels, structure alignments, MD representative snapshots, transparent PNG export, ray tracing, journal-quality…

4 2mo ago A 82 tokens original MIT

Ling-MD/md-agent-skills

Skill Claude CodeCodex

Use when creating reusable PyMOL figures for protein-protein or chain-chain interfaces from PDB/MD snapshot files, especially when the user wants only protein kept, water/ions/ligands removed, inter-chain hydrogen-bonding residues shown as sticks, green dashed hydrogen bonds, chain-colored cartoons and labels…

4 2mo ago A 97 tokens original MIT