zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for read alignment, sorting, indexing, mapping statistics, and downstream-ready alignment artifacts.
not rated 26 5mo ago A 23 tokens
original MIT
26Stars on the repository
66Mods indexed here, across every type
5mo agoLast push, which is what freshness is scored on
MITLicence, which decides whether bodies are shown
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for retrieving public omics datasets, sequences, annotations, and literature-linked biological resources.
not rated 26 5mo ago A 21 tokens
original MIT
read-qc
03zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for sequencing read QC, trimming, contamination screening, and pre-alignment cleanup.
not rated 26 5mo ago A 21 tokens
original MIT
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for packaging analysis outputs into reproducible reports, clean tables, and publication-ready figure exports.
not rated 26 5mo ago A 26 tokens
original MIT
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for foundational sequence parsing, conversion, compression handling, and interval-aware file validation.
not rated 26 5mo ago A 23 tokens
original MIT
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for orchestrating reproducible omics pipelines with workflow engines and clear execution provenance.
not rated 26 5mo ago A 20 tokens
original MIT
ehr-analysis
07zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
End-to-end EHR predictive modeling pipeline with PyHealth, covering dataset loading, task definition, model training, evaluation, calibration, and clinical interpretation.
not rated 26 5mo ago A 33 tokens
original MIT
atac-seq
08zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
ATAC-seq processing with assay QC, MACS3 peak calling, consensus peak matrices, differential accessibility, and motif or footprint follow-up.
not rated 26 5mo ago A 34 tokens
original MIT
chip-seq
09zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
ChIP-seq peak calling and downstream interpretation with MACS3, signal track export, annotation, motif analysis, and differential binding review.
not rated 26 5mo ago A 32 tokens
original MIT
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for RNA modification analysis such as m6A peak calling, differential modification, and transcript-level visualization.
not rated 26 5mo ago A 27 tokens
original MIT
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for regulatory network inference, regulon scoring, perturbation-aware comparison, and network visualization.
not rated 26 5mo ago A 25 tokens
original MIT
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for Hi-C and related 3D genomics analyses including compartments, loops, TADs, differential contacts, and visualization.
not rated 26 5mo ago A 35 tokens
original MIT
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for methylation alignment or calling, DMR analysis, methylation QC, and locus-level interpretation.
not rated 26 5mo ago A 26 tokens
original MIT
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for orthology, synteny, ancestral reconstruction, and evolutionary comparison across genomes.
not rated 26 5mo ago A 23 tokens
original MIT
copy-number
15zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for copy-number estimation, segmentation, annotation, and visualization in sequencing-based assays.
not rated 26 5mo ago A 20 tokens
original MIT
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for de novo assembly, scaffolding, polishing, contamination review, and assembly QC.
not rated 26 5mo ago A 23 tokens
original MIT
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for nanopore or PacBio long-read QC, alignment, polishing, methylation-aware analysis, and structural variant discovery.
not rated 26 5mo ago A 30 tokens
original MIT
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for haplotype phasing, genotype imputation, reference-panel matching, and imputation QC.
not rated 26 5mo ago A 26 tokens
original MIT
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for small-variant and structural-variant discovery, filtering, annotation, and interpretation from sequencing data.
not rated 26 5mo ago A 25 tokens
original MIT
metagenomics
20zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Shotgun metagenomics workflow with host-depletion-aware QC, taxonomic profiling, functional profiling, AMR follow-up, and reproducible community output tables.
not rated 26 5mo ago A 36 tokens
original MIT
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for amplicon microbiome analysis including denoising, taxonomy assignment, diversity analysis, and differential abundance.
not rated 26 5mo ago A 31 tokens
original MIT
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for outbreak-style pathogen genomics, surveillance, lineage assignment, and transmission-oriented comparative analysis.
not rated 26 5mo ago A 26 tokens
original MIT
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for multiple sequence alignment, tree inference, annotated tree visualization, and distance-based evolutionary comparison.
not rated 26 5mo ago A 23 tokens
original MIT
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for fine-mapping, colocalization, mediation, pleiotropy analysis, and Mendelian randomization.
not rated 26 5mo ago A 28 tokens
original MIT
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