computational-biology skills

aipoch/medical-research-skills

Skill Claude CodeCodex

Use when training a LightGBM model on tabular data in R and returning model metrics, feature importance ranking tables, and feature importance plots.

001TMF/blatant-why

Skill Claude Code

Plan, execute, monitor, and assess protein/antibody design campaigns. This skill governs how to size a campaign, track run state, coordinate multi-run efforts, estimate cost and time on each compute target (local GPU, HPC, Tamarind), monitor progress, and evaluate campaign health.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this skill to run a deterministic local pass over GWAS summary statistics, flag common QC issues, and emit a compact interpretation plan for downstream clumping, heritability, and functional follow-up.

HolobiomicsLab/asb-skill-collections

Skill Claude CodeCodex

Use when when you have aligned ChIP-Seq reads (BED or BEDPE format) and a corresponding control sample, and you need explicit control over peak-calling parameters—including fragment-length prediction, local bias windows (d, slocal=1kb, llocal=10kb), background scaling, and score-cutoff.

YuliaNuzhnenko/bioinformatics-agent-skills

Skill Claude CodeCodex

Parses AlphaFold2 PDB files, computes per-residue pLDDT confidence scores, and evaluates Solvent Accessible Surface Area (SASA) of active site pockets.

naity/FM4Life

Skill Claude CodeCodex needs its repo

Skill for protein structure prediction and analysis with AlphaFold. Use this skill whenever a user wants to predict or fetch a protein 3D structure, download structures from the AlphaFold Database (AFDB), run ColabFold for novel proteins, parse pLDDT confidence scores or PAE (predicted aligned error) from AlphaFold…