591 tagged computational-biology, measured the same way as everything else here.
Browse within: bioinformatics 374ai-for-science 200genomics 200llm-agents 200biology 192cancer-genomics 192data-analysis 192Cheminformatics 146drug-discovery 40antibody-design 19boltzgen 19alphafold 15ai-scientist 12antigravity 12
aipoch/medical-research-skills
Skill Claude CodeCodex
Use when training a LightGBM model on tabular data in R and returning model metrics, feature importance ranking tables, and feature importance plots.
aipoch/medical-research-skills
Skill Claude CodeCodex
Use this skill to compute ESTIMATE immune-related microenvironment scores from a bulk expression matrix, generate an ESTIMATE score heatmap, and optionally generate group-wise ESTIMATE score boxplots plus significance tables when a sample group file is supplied. Trigger keywords: ESTIMATE, immune score, stromal score…
aipoch/medical-research-skills
Skill Claude CodeCodex
Use when validating an existing prognostic risk signature on an external bulk expression cohort with survival outcomes, producing risk scores, Kaplan-Meier curves, risk distribution plots, heatmap, and time-dependent ROC curves. NOT for: model training, feature selection, nomogram construction, calibration analysis…
Skill Claude CodeCodex
Plan, execute, monitor, and assess protein/antibody design campaigns. This skill governs how to size a campaign, track run state, coordinate multi-run efforts, estimate cost and time on each compute target (local GPU, HPC, Tamarind), monitor progress, and evaluate campaign health.
Skill Claude CodeCodex
Skill "by-design-workflow" from 001TMF/blatant-why, covering by design workflow — master orchestration skill, when to use this skill, inputs, outputs and clarification questions.
Skill Claude CodeCodex
Thorough target research before design prevents wasted compute and failed campaigns. This skill defines an 8-phase pipeline that retrieves, validates, and packages research findings with quality gates and anti-drift checkpoints at every stage.
Skill Claude CodeCodex
Use this skill to generate a tiny synthetic plant image, segment it with PlantCV, and summarize simple morphology-style phenotyping measurements.
Skill Claude CodeCodex
Use this skill to run a deterministic Kaplan-Meier survival analysis over a toy cohort and summarize per-group survival curves.
Skill Claude CodeCodex
Use this skill to generate a small deterministic conformer ensemble with RDKit ETKDG and summarize the lowest-energy structures.
HolobiomicsLab/asb-skill-collections
Skill Claude CodeCodex
Use when when you have aligned ATAC-seq BAM files and need to quantify Tn5 transposase insertion patterns around specific genomic coordinates (motif sites, peaks, regulatory regions) to detect transcription factor occupancy footprints or compare chromatin accessibility between bound and unbound.
HolobiomicsLab/asb-skill-collections
Skill Claude CodeCodex
Use when you have aligned ChIP-Seq reads (in BED or BEDPE format) and need to convert them into quantitative genome-wide signal tracks (coverage, p-value, or q-value scores) for downstream statistical comparison or peak detection.
HolobiomicsLab/asb-skill-collections
Skill Claude CodeCodex
Use when when setting up a bioinformatics pipeline (such as HiC-Pro) that depends on multiple compiled or independently distributed binaries and you need to confirm that all required tools are installed, executable, meet version requirements (e.g., samtools ≥1.
YuliaNuzhnenko/bioinformatics-agent-skills
Skill Claude CodeCodex
Parses AlphaFold2 PDB files, computes per-residue pLDDT confidence scores, and evaluates Solvent Accessible Surface Area (SASA) of active site pockets.
YuliaNuzhnenko/bioinformatics-agent-skills
Skill Claude CodeCodex
Parses multi-sample VCF files, queries Ensembl VEP REST API, filters ClinVar pathogenicity ratings, and maps driver mutations to FDA targeted drugs.
YuliaNuzhnenko/bioinformatics-agent-skills
Skill Claude CodeCodex
Generates production Nextflow DSL2 process modules, handles tuple channel mapping, pins Docker containers, and configures AWS Batch / SLURM profiles.
Skill Claude CodeCodex
Queries clinical databases (Open Targets, ClinicalTrials.gov) via curl for target-disease associations, target tractability assessment, and clinical trial discovery. This skill should be used when the user asks to "validate drug targets", "find clinical trials", "assess target tractability", "discover disease…
Skill Claude CodeCodex
Validates synthetic lethality claims from CRISPR knockout screens using BioGRID ORCS 5-phase workflow. This skill should be used when the user asks to "validate synthetic lethality", "query CRISPR essentiality data", "find gene dependencies", "compare cell line screens", or mentions BioGRID ORCS, gene knockout data…
Skill Claude CodeCodex
Orchestrates life sciences APIs to build knowledge graphs using the Fuzzy-to-Fact protocol, combining MCPs for nodes and curl for edges, then persisting to Graphiti. This skill should be used when the user asks to "build knowledge graphs", "find biological connections", "explore drug repurposing", "validate drug…
Skill Claude CodeCodex
Skill for protein structure prediction and analysis with AlphaFold. Use this skill whenever a user wants to predict or fetch a protein 3D structure, download structures from the AlphaFold Database (AFDB), run ColabFold for novel proteins, parse pLDDT confidence scores or PAE (predicted aligned error) from AlphaFold…
Skill Claude CodeCodex
Skill for working with ESM2 protein language models from Meta FAIR. Use this skill whenever the user wants to generate protein embeddings or representations, score variant effects or predict mutation fitness, run contact prediction, or use ESMFold for structure prediction. Also trigger when the user mentions ESM2…
Skill Claude CodeCodex
Skill for genomic sequence modeling and design with Evo2 from Arc Institute. Use this skill when a user wants to model or generate DNA sequences, score variant effects at single-nucleotide resolution, extract genomic embeddings, analyze mutations in non-coding or coding regions, design synthetic genomic elements…
Skill Claude CodeCodex
Plan and run study-shaped protein-binder rounds with interchangeable toolchains, execution profiles, license gates, output checks, and result boundaries.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: