323 tagged genomics, measured the same way as everything else here.
Browse within: bioinformatics 243ai-for-science 60computational-biology 60llm-agents 60Biomedical 59awesome 59awesome-list 59drug-discovery 57claude-plugin 56equity 52local-first 52openclaw 52clinvar 33allele-frequency 32
Skill Claude CodeCodex
Genome, transcriptome, and protein completeness assessment via BUSCO v6. Agentic lineage routing from organism description, all three BUSCO modes, auto-lineage support, and full demo mode without the BUSCO binary.
Skill Claude CodeCodex
Transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Scores a 224x224 tile and returns per-gene log1p-CPM values for any HGNC symbols you ask for, with a CSV, a report and a reproducibility bundle.
Skill Claude CodeCodex
Full reimplementation of DnaSP 6 for population genetics analysis of aligned DNA sequences. Covers nucleotide diversity, haplotype statistics, neutrality tests (Tajima's D, Fu & Li's D/F, R2), linkage disequilibrium (D, D', R², ZnS, Za, ZZ), minimum recombination (Rm), mismatch distribution, InDel polymorphism…
Skill Claude CodeCodex
Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, and integrate with scanpy/PyTorch for population-scale single-cell analysis. Use this skill when: (1) Querying single-cell expression data by cell type, tissue, or disease, (2) Exploring available single-cell datasets…
Skill Claude CodeCodex
Walk a person through their lab report — read the original document, organize results by panel, flag out-of-range values against the printed reference ranges, compare with their history, and explain in plain language. Use when the user uploads a lab report (PDF/image) or asks what their blood test results mean.
Skill Claude CodeCodex
Do biomedical literature and variant research with the BioMCP CLI, and file what you learn about the tool itself as issues in the biomcp repo.
Skill Claude CodeCodex
Search and retrieve biomedical data - genes, variants, clinical trials, diagnostic tests, articles, drugs, diseases, pathways, proteins, adverse events, pharmacogenomics, and phenotype-disease matching. Use for gene function, variant pathogenicity, trials, diagnostics, drug safety, pathway context, disease workups…
Skill Claude CodeCodex
Interactive scientific visualization with Plotly. Two APIs: plotly.express (px) for one-liner DataFrame plots, plotly.graphobjects (go) for trace-level control. 40+ chart types with hover, zoom, pan, animation. Exports HTML or static PNG/SVG/PDF via kaleido. Use for volcano plots with gene hover, dose-response…
Skill Claude CodeCodex
Statistical visualization on matplotlib with native pandas support. Auto aggregation, CIs, grouping for distributions (histplot, kdeplot), categorical (boxplot, violinplot), relational (scatterplot, lineplot), regression (regplot, lmplot), matrix (heatmap, clustermap), grids (pairplot, FacetGrid). Use for quick…
Skill Claude CodeCodex
Biopython sequence analysis: parse FASTA/FASTQ/GenBank/GFF (SeqIO), NCBI Entrez (esearch/efetch/elink), remote/local BLAST, pairwise/MSA alignment (PairwiseAligner, MUSCLE/ClustalW), phylogenetic trees (Phylo). Use for gene family studies, phylogenomics, comparative genomics, NCBI pipelines. For…
Skill Claude CodeCodex
Reusable infrastructure for invoking Claude (via anthropics/claude-code-action) on Google Vertex AI from GitHub Actions workflows in this repo. Authentication is via Workload Identity Federation — no long-lived secrets.
Skill Claude CodeCodex
Use dsub to run one-off compute jobs on Google Cloud when your analysis requires more compute/memory than the local environment, or needs specific Docker images that are impractical to run locally.
Skill Claude CodeCodex
End-to-end regression testing for assembly pipeline changes against Terra submissions.
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Guidance for cell-free protein synthesis (CFPS) optimization. Use when: (1) Planning CFPS experiments, (2) Troubleshooting low yield or aggregation, (3) Optimizing DNA template design for CFPS, (4) Expressing difficult proteins (disulfide-rich, toxic, membrane).
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
Discover and invoke 1,676 deduplicated biomedical AI agent skills from the Awesome Bio Agent Skills repository (20 source repos, 15 categories). Use this skill as a router whenever a user needs a bioinformatics/biomedical task (genomics, transcriptomics, single-cell, proteomics, protein design, clinical, epigenomics…
BioTender-max/awesome-bio-agent-skills
Skill Claude CodeCodex
End-to-end pipeline from structured research input to a full manuscript plan (一条龙 Pipeline).
Skill Claude CodeCodex
Author, resolve, compile and publish a just-dna annotation module — the spec directory layout, the CSV column contracts and vocabularies, the enrich→compile pipeline, and the checks that decide whether a module will publish. Use when creating a new annotation module, editing an existing spec (variants.csv…
Skill Claude CodeCodex
Pulls the user's medical records from patient portals (Epic MyChart, Oracle/Cerner) via end-to-end-encrypted SMART on FHIR, into per-provider JSON files Tula can reason over. Personal data is referenced from an external profile file, never embedded. USE FOR: connecting or refreshing records, trending labs across…
Skill Claude CodeCodex
Personalized ambient health awareness. Pulls environmental, public-health, and place-based data for the user's location and triages it against their longitudinal record, surfacing only what matters. USE FOR: 'lookout for me' briefings, ambient/air/UV/weather/pressure checks, place-based resource queries, travel-mode…
Skill Claude CodeCodex
Aggregates a user's health-related signal feeds (social, web, wearables, portal, calendar) into a curated, scored digest. Personal data is referenced from an external profile file, never embedded. USE FOR: 'run myhealth-pulse', scheduled daily/weekly pulses, mention digests. DO NOT USE FOR: PDFs (med-pdf), clinician…
Skill Claude CodeCodex
Use this skill to generate a tiny synthetic plant image, segment it with PlantCV, and summarize simple morphology-style phenotyping measurements.
Skill Claude CodeCodex
Use this skill to run a deterministic group fairness audit over a tiny clinical toy cohort with fairlearn.
Skill Claude CodeCodex
Use this skill to harmonize small metadata tables with inconsistent column names and categorical labels into one canonical TSV plus a compact JSON summary.
Skill Claude CodeCodex
Reason about germline and somatic variant classification using ACMG/AMP 2015 and AMP/ASCO/CAP frameworks. Use when the user asks to classify a variant, interpret a VCF annotation, resolve a VUS, apply ACMG criteria, weigh ClinVar evidence, evaluate gnomAD allele frequencies, interpret REVEL/CADD/SpliceAI scores…