359 tagged ai-for-science, measured the same way as everything else here.
Browse within: llm-agents 223computational-biology 200genomics 200ai-scientist 62autonomous-research 62Autonomous Agents 46automated-science 46ai4science 37bioinformatics 35ai-assistant 34ai-research-tool 24local-first 24open-science 24reproducible-research 24
Skill Claude CodeCodex
Publication-grade correctness and legibility rules for final-deliverable scientific figures, not exploratory plots. Use for a figure that will ship in a report, paper, export, or kept artifact. Covers data fidelity, label economy, color threading, chart choice, layout, and render-then-verify QA without imposing a…
Skill Claude CodeCodex
Judge and reshape the story told by an entire paper figure deck. Use when writing or revising a paper to derive a grounded brief from the manuscript and captions, review the full deck as a handling editor, and hand an ordered figure arc to figure-composer.
Skill Claude CodeCodex
Evaluate and use SSH Remote Compute before choosing where to run GPU, high-memory, parallel, batch, model-inference, bioinformatics, or other long-running scientific work; supports short remote commands and asynchronous jobs with automatic harvest and analysis.
Skill Claude CodeCodex
Use BEFORE reading any data file that could be large (CSV/TSV, Parquet, HDF5, FITS, NetCDF, NDJSON, genomics FASTQ/FASTA/VCF/BAM, GRIB, ROOT, or big text/simulation logs like VASP OUTCAR). Returns a compact memory pointer — header/schema/shape/sample/key numbers — by introspection and sampling in bounded memory, so…
Skill Claude CodeCodex
Use whenever you generate or review a chart, plot, table, or paper figure in this workspace, including work delegated by paper-writing, literature-survey, and experiment skills. Applies the Open Science publication style, enforces readable final-size layout for figures and tables, and rejects generic diagram-tool…
Skill Claude CodeCodex
Use when the user asks to run, submit, monitor, or cancel a job on a remote machine over SSH — their own GPU/CPU server, a workstation, or a Slurm cluster ("the cluster", a login node, "my 3090 box", "the compute server"). Picks a saved machine, runs the work directly over SSH (or via Slurm when present), tracks it…
Skill Claude CodeCodex
A workflow for turning books about concepts, theories, or analysis methods into reusable task instructions. It scans document images, links claims to evidence, and checks the result through human review.
Skill Claude CodeCodex
Correctness and legibility checklist for publication figures, plus a matplotlib sidecar. Load before plotting anything and call applyfigurestyle() (role-mapped font ladder, outward ticks, frameless legends, 300-dpi saves, CJK-safe fonts). Covers data fidelity, label budgets, axis/colour/type rules, chart choice by…
Skill Claude CodeCodex
Instructions for turning a scientific paper PDF into a journal-club presentation or literature report. They require reconstructing the paper's scientific logic before creating the slides.
Skill Claude CodeCodex
Protocol for GPU agents to clone external GitHub repos, install their dependencies, download pretrained weights, and integrate them as featurizers or models inside a focus-area train.py. Use this when a proposal references a GitHub repo or pretrained checkpoint that is not already present in the focus-area workspace.
Skill Claude CodeCodex
Generic skill for self-organizing multi-agent teams that collaborate on an optimization problem. Agents discuss dimensions, form teams, run experiments, and adapt when stagnating. Uses AnonAPI posts for discussion and workspaces for shared state.
Skill Claude CodeCodexCursor
Run focused literature and web research from a grounded note. Use when a grounded note already exists and you want targeted research results, opened-link evidence, deeper per-paper analysis materials, optional downloaded literature, and a two-stage literature output (litinitial.md then refined lit.md).
Skill Claude CodeCodexCursor
Review a research report draft with a structured scoring rubric, run a bounded repair loop when needed, and produce the final deliverable report.
Skill Claude CodeCodexCursor
Run the full One-Report pipeline from one input file through grounding, research, evidence-rich report drafting, final review quality-gating, and export, while reusing existing skills, preserving current contracts, and enforcing strict downstream skill fidelity for every grounded unit.
harbor-framework/terminal-bench-science
Skill Claude CodeCodex
Convert a Harbor benchmark task from Harbor's shared verifier mode (default) to separate verifier mode. Use when the user asks to "convert this task to separate verifier", "make the verifier run in its own container", or asks about Harbor's separate-verifier environment for a specific task.
harbor-framework/terminal-bench-science
Skill Claude CodeCodex
Review a benchmark task PR — downloads all artifacts, analyzes against the rubric, launches harbor view, and enables interactive review.
harbor-framework/terminal-bench-science
Skill Claude CodeCodex
Propose new rubric criteria based on review findings — creates a branch and PR.
Skill Claude CodeCodex
Use for deterministic molecule understanding, graph-level editing, generation, and validation with MoleCode — an explicit Mermaid graph in which every atom and bond is a typed, named node/edge. Converting SMILES to MoleCode exposes the molecule as explicit atoms, hydrogen counts, bonds, bond orders, stereochemistry…
Sibyl-Research-Team/AutoResearch-SibylSystem
Skill Claude CodeCodex
A writing agent that uses OpenAI Codex, an AI coding and reasoning assistant, to write academic papers. The description does not specify which paper sections or formats it supports.
Sibyl-Research-Team/AutoResearch-SibylSystem
Skill Claude CodeCodex
A background experiment supervisor that checks GPU availability, starts queued experiments, and handles changes in runtime or status.
Sibyl-Research-Team/AutoResearch-SibylSystem
Skill Claude CodeCodex
A research-data assistant that synchronises data with Feishu cloud storage, an online workspace used to store and share files and information.
Skill Claude CodeCodex
Use when the user has a research question and needs a complete experiment package — design document, runnable code, results (measured or simulated with honest provenance), publication-grade figures, structured report. Single-stage, no Python runtime.
Skill Claude CodeCodex
Use when the user wants a paper audited for integrity issues — image misuse, numerical anomalies, logical gaps — and needs a reviewable evidence report. Works on external papers (PDF / DOI / arXiv) and on outputs from a local paper-writer run. Single-stage skill.
Skill Claude CodeCodex
Generate beautiful, high-resolution mindmaps from Markdown unordered lists. Outputs interactive HTML, HD PNG, and PDF with colorful branch themes.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: