ai-scientist skills

K-Dense-AI/scientific-agent-skills

Skill Claude Code

Queries documented public database APIs with explicit endpoints, filters, pagination, and provenance. Used when a scientific, regulatory, financial, or other database-backed fact must be retrieved reproducibly from a named source rather than inferred from general knowledge.

openags/paper-search-mcp

Skill Claude CodeCodex

Search, download, and read academic papers from 20+ sources (arXiv, PubMed, Semantic Scholar, CrossRef, etc). Use when the user asks to find papers, search for research, look up academic literature, download a paper PDF, or extract text from a paper.

ai4s-research/open-science

Skill Claude CodeCodex

Use when the user asks to run, submit, monitor, or cancel a job on a remote machine over SSH — their own GPU/CPU server, a workstation, or a Slurm cluster ("the cluster", a login node, "my 3090 box", "the compute server"). Picks a saved machine, runs the work directly over SSH (or via Slurm when present), tracks it…

OpenRaiser/NanoResearch

Skill Claude CodeCodex

Draft a LaTeX research paper from all previous stage outputs.

OpenLAIR/dr-claw

Skill Claude CodeCodex

Use when a quest needs concrete hypotheses, limitation analysis, candidate directions, or a selected idea relative to the active baseline.

yogsoth-ai/de-anthropocentric-research-engine

Skill Claude CodeCodex

Generate testable hypotheses from theory, empirical regularity, anomaly, or explicit explanatory competition. Deductive, inductive, abductive, and competing-hypothesis generation are modes; discriminating predictions and comparison are activated in competing mode.

ai4s-research/ai4s-skills

Skill Claude CodeCodex

Use when the user wants a paper audited for integrity issues — image misuse, numerical anomalies, logical gaps — and needs a reviewable evidence report. Works on external papers (PDF / DOI / arXiv) and on outputs from a local paper-writer run. Single-stage skill.

Omni-Scientist/OmniScientist

Skill Claude CodeCodex

Run OmniScientist end to end in the OmniScientist CLI using DeepSeek V4 Flash. Turn raw research data (images, signals, audio, video, 3-D, tables, or graphs) and an open direction into perceived evidence, a falsifiable hypothesis, recorded analysis, real citations, a gated candidate paper, PDF, and Overleaf bundle.…

wanshuiyin/Anti-Autoresearch

Skill Claude Code

Audit whether a paper's EVALUATION DESIGN actually measures what it claims and whether its reporting is complete — the validity layer family D (experiment-forensics) cannot reach. Three patterns: train/test leakage means the reported score may not measure generalization (HP-EVAL-LEAKAGE — adopts the Kapoor & Narayanan…

AI4Scientist/nano-scientist

Skill Claude Code

An automated loop for improving a generated research paper through repeated review, editing, and recompilation. Recompiling rebuilds the paper so changes can be checked in the final document.

natnew/awesome-ai-scientists

Skill Claude CodeCodex

Kicks off a new feature by finding the next incomplete phase in specs/roadmap.md, creating a git branch, interviewing the user about scope/decisions/context, and writing a dated spec directory under specs/ containing plan.md, requirements.md, and validation.md. Trigger when the user says "feature spec", "next phase"…

whenpoem/aiscientist

Skill Claude Code

Audit a past pruning or approval decision by creating a counterfactual branch from a saved snapshot without mutating the live graph. Use when the user asks what would have happened under another decision, disputes a paused branch, or wants to inspect an earlier checkpoint.

YuliaNuzhnenko/bioinformatics-agent-skills

Skill Claude CodeCodex

Parses AlphaFold2 PDB files, computes per-residue pLDDT confidence scores, and evaluates Solvent Accessible Surface Area (SASA) of active site pockets.