428 tagged ai4science, measured the same way as everything else here.
Browse within: bioinformatics 209agent 198claude-science 198mit-license 198open-source 198science-research 198academic-writing 180awesome-list 180ai4hpc 60hpc 60hpc-ai 60mcp-tools 60ai-for-science 32local-first 29
Skill Claude CodeCodex
Create new skills, modify and improve existing skills, and measure skill performance. Use when users want to create a skill from scratch, update or optimize an existing skill, run evals to test a skill, benchmark skill performance with variance analysis, or optimize a skill's description for better triggering accuracy.
Skill Codex
A workflow for turning books about concepts, theories, or analysis methods into reusable task instructions. It scans document images, links claims to evidence, and checks the result through human review.
Skill Claude CodeCodex
Handles batch effects in bulk RNA-seq via design-matrix inclusion (the correct path for DE), ComBat/ComBat-seq for visualization, SVA for unknown latent factors, RUVSeq for negative-control-gene-anchored unwanted variation, and limma::removeBatchEffect for plotting only. Encodes the Nygaard 2016 cardinal sin against…
Skill Claude Code
Map the genealogical lineage and historical progression of a research field. Visualize how earlier technical challenges led to later approaches and improvements, producing a Markdown report with embedded Mermaid diagrams. Trigger when the user asks for a topic's developmental trajectory, a model's family tree…
Skill Claude CodeCodex
The grounding layer for AI-assisted research: scan the real prior art around an idea, gauge how crowded or open the gap is, and verify every citation against the source of truth. You (the agent) supply the discovery intelligence — writing search queries, judging relevance, reasoning about the gap — while the…
Skill Claude CodeCodex
Build structured datasets from academic papers. Use when the user wants to extract structured data from scientific literature, traverse citation graphs, search OpenAlex for papers, or create datasets from PDFs for research purposes.
Skill Claude CodeCodex
Reconstruct ancestral states at internal phylogenetic nodes for sequences (PAML codeml, IQ-TREE --ancestral, GRASP, FastML), discrete traits (corHMM hidden-rate Markov, ape::ace, phytools::make.simmap stochastic mapping, BayesTraits), and continuous traits (phytools::fastAnc, geiger Brownian/OU, RPANDA). Use when…
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: