FridrichMethod/awesome-skills

Curated, auto-synced collection of 2,000+ Claude Code & Codex skills for AI4Protein, bioinformatics, AI development, and academic paper writing. One curl command installs them all.

15Stars on the repository
217Mods indexed here, across every type
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FridrichMethod/awesome-skills

Skill Claude Code

AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.

not rated 15 today A 34 tokens

FridrichMethod/awesome-skills

Skill Claude CodeCodex

Turns shotgun classifier output into a defensible abundance table with Bracken Bayesian re-estimation, then compositional treatment (CLR, zero handling), library-size normalization, reference-frame differential abundance, and optional absolute quantification. Covers why a relative-abundance change is not a change, why…

not rated 15 today A 158 tokens

academic-humanizer

03

FridrichMethod/awesome-skills

Skill Claude Code

Improve the clarity and voice of AI-assisted academic writing (papers, theses, rebuttals) and funding proposals (NSF Project Summary/Description, NIH Specific Aims): preserve scholarly conventions, match claims to evidence (and, for proposals, claims to feasibility), and match the author's own voice. It never changes…

not rated 15 today A 97 tokens

FridrichMethod/awesome-skills

Skill Claude CodeCodex

Multi-perspective academic paper review with dynamic reviewer personas. Runs a 5-seat, role-separated review panel (Journal-Fit Reviewer + 3 peer-review roles + Devil's Advocate) with field-specific expertise; role separation is not a claim of independent error processes. Supports full review, re-review…

not rated 15 changed 13d ago C 243 tokens

academic-paper

05

FridrichMethod/awesome-skills

Skill Claude CodeCodex

12-agent academic paper writing pipeline. 11 modes (full/plan/outline/revision/revision-coach/abstract/lit-review/format-convert/citation-check/disclosure/rebuttal-audit). 6 paper types, 5 citation formats, bilingual abstracts, LaTeX/DOCX-via-Pandoc/PDF output. Style Calibration + Writing Quality Check + Anti-Patterns…

not rated 15 changed 13d ago C 321 tokens

academic-pipeline

06

FridrichMethod/awesome-skills

Skill Claude CodeCodex

Orchestrator for the full academic research pipeline: research -> write -> integrity check -> review -> revise -> re-review -> re-revise -> final integrity check -> finalize. Coordinates deep-research, academic-paper, and academic-paper-reviewer into a seamless 10-stage workflow with mandatory, coverage-bounded…

not rated 15 changed 13d ago C 167 tokens

academic-writing

07

FridrichMethod/awesome-skills

Skill Codex

Scholarly writing and research compliance. Use for CRediT, preregistration, Plan S, Nelson Memo, preprints, ORCID, LLM disclosure.

not rated 15 today A 38 tokens

academy-guide

08

FridrichMethod/awesome-skills

Skill Claude CodeCodex

Stop and check this skill before finishing any reply to a question about how to use Claude or a Claude product — it recommends matching courses, tutorials, and use cases from Claude Academy (academy.claude.com), Anthropic's learning hub. Trigger on: "how do I", "how can I", "getting started with", "what can Claude…

not rated 15 today A 208 tokens

access

09

FridrichMethod/awesome-skills

Skill Claude Code

Manage Discord channel access — approve pairings, edit allowlists, set DM/group policy. Use when the user asks to pair, approve someone, check who's allowed, or change policy for the Discord channel.

not rated 15 changed 20d ago A 43 tokens

FridrichMethod/awesome-skills

Skill Claude CodeCodex

Implement WCAG 2.2 compliant interfaces with mobile accessibility, inclusive design patterns, and assistive technology support. Use when auditing accessibility, implementing ARIA patterns, building for screen readers, or ensuring inclusive user experiences.

not rated 15 today A 49 tokens

FridrichMethod/awesome-skills

Skill Claude CodeCodex

Applies ACMG/AMP 2015 framework with ClinGen SVI specifications, Tavtigian 2018/2020 Bayesian point system, Abou Tayoun 2018 PVS1 decision tree, Pejaver 2022 and Bergquist 2025 calibrated PP3/BP4 thresholds for REVEL/BayesDel/AlphaMissense, Brnich 2020 PS3/BS3 OddsPath, Walker 2023 SpliceAI splicing framework, and…

not rated 15 today A 167 tokens

FridrichMethod/awesome-skills

Skill Claude CodeCodex

Removes sequencing adapters from FASTQ reads with Cutadapt and Trimmomatic, including paired-end read-through, small-RNA 3' adapters, amplicon primers, and anchored/linked adapters. Use when FastQC shows adapter content climbing toward the 3' end, when inserts are shorter than the read length (small-RNA, cfDNA, FFPE)…

not rated 15 today A 112 tokens

FridrichMethod/awesome-skills

Skill Claude CodeCodex

Designs adaptive clinical trials including group-sequential (O'Brien-Fleming, Pocock, Lan-DeMets spending), sample-size re-estimation (blinded Friede-Kieser, unblinded Cui-Hung-Wang, Mehta-Pocock promising zone), seamless Phase 2/3 with treatment-arm selection, population enrichment, and response-adaptive…

not rated 15 today A 147 tokens

adaptyv-bio

14

FridrichMethod/awesome-skills

Skill Claude CodeCodex

API + Python SDK for ordering cell-free protein expression and binding assays. Submit sequences for expression (10–100 µg), measure binding affinity (KD) against targets, track status, and retrieve results programmatically — no wet-lab setup. Built for ML-guided directed evolution and antibody/nanobody optimization.…

not rated 15 today A 80 tokens

adaptyv

15

FridrichMethod/awesome-skills

Skill Claude CodeCodex

Uses the Adaptyv Bio Foundry API and Python SDK to design protein characterization experiments, estimate costs, submit sequences, monitor laboratory progress, and retrieve results. Applies to Adaptyv Foundry, its target catalog, binding screening and affinity assays, thermostability, expression, fluorescence, epitope…

not rated 15 changed 20d ago A 86 tokens

adhd-daily-planner

16

FridrichMethod/awesome-skills

Skill Claude Code

Time-blind friendly planning, executive function support, and daily structure for ADHD brains. Specializes in realistic time estimation, dopamine-aware task design, and building systems that actually work for neurodivergent minds.

not rated 15 today A 49 tokens

FridrichMethod/awesome-skills

Skill Claude CodeCodex

Predicts ADMET properties using ADMETlab 3.0 (119 platform features, including 77 prediction models with modeled-endpoint uncertainty), ADMET-AI, DeepChem MolNet, and chemprop D-MPNN with explicit handling of OECD QSAR principles, applicability domain assessment, calibration, hERG/CYP/AMES endpoints, and PAINS /…

not rated 15 today A 123 tokens

aeon

18

FridrichMethod/awesome-skills

Skill Claude CodeCodex

Skill "aeon" from FridrichMethod/awesome-skills, covering aeon, when to use, prerequisites, quick start and load a small benchmark dataset.

not rated 15 today A 91 tokens

agent-browser

19

FridrichMethod/awesome-skills

Skill Claude Code

Browse the web for any task — research topics, read articles, interact with web apps, fill forms, take screenshots, extract data, and test web pages. Use whenever a browser would be useful, not just when the user explicitly asks.

not rated 15 today A 51 tokens

agent-development

20

FridrichMethod/awesome-skills

Skill Claude CodeCodex

This skill should be used when the user asks to "create an agent", "add an agent", "write a subagent", "agent frontmatter", "when to use description", "agent examples", "agent tools", "agent colors", "autonomous agent", or needs guidance on agent structure, system prompts, triggering conditions, or agent development…

not rated 15 today A 80 tokens

FridrichMethod/awesome-skills

Skill Claude Code

Use the AgentD workflow to mine evidence, design molecules, and rank candidates with SAR plus ADMET annotations for early drug discovery tasks.

not rated 15 today A 34 tokens

FridrichMethod/awesome-skills

Skill Claude CodeCodex

Identify direct miRNA-target interactions from AGO HITS-CLIP, AGO-CLEAR-CLIP (chimeric reads), HEAP (Halo-Ago2 mouse), chimeric eCLIP / miR-eCLIP (deep miRNA-target profiling), or CLASH using chimeric-read processing pipelines, seed-pairing analysis, and 3' auxiliary pairing rules. Use when distinguishing direct miRNA…

not rated 15 today A 152 tokens

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