Skill Claude CodeCodex
AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.
Skill Claude CodeCodex
AI-powered adeno-associated virus (AAV) vector design for gene therapy including capsid engineering, promoter selection, and tropism optimization.
Skill Claude CodeCodex
Turns shotgun classifier output into a defensible abundance table with Bracken Bayesian re-estimation, then compositional treatment (CLR, zero handling), library-size normalization, reference-frame differential abundance, and optional absolute quantification. Covers why a relative-abundance change is not a change, why…
Skill Claude CodeCodex
Improve the clarity and voice of AI-assisted academic writing (papers, theses, rebuttals) and funding proposals (NSF Project Summary/Description, NIH Specific Aims): preserve scholarly conventions, match claims to evidence (and, for proposals, claims to feasibility), and match the author's own voice. It never changes…
Skill Claude CodeCodex
Multi-perspective academic paper review with dynamic reviewer personas. Runs a 5-seat, role-separated review panel (Journal-Fit Reviewer + 3 peer-review roles + Devil's Advocate) with field-specific expertise; role separation is not a claim of independent error processes. Supports full review, re-review…
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Challenges core arguments and logical coherence as the devils advocate reviewer in the editorial panel.
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Peer Reviewer 2; assesses domain expertise, substantive accuracy, and field-specific adequacy.
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Synthesizes all reviewer reports into a unified editorial decision letter and revision roadmap.
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Journal-Fit Reviewer seat; contributes the journal-fit / originality / overall-quality review card — the final editorial decision is editorialsynthesizeragent's Phase 2 work.
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Identifies the papers field and dynamically configures the reviewer teams identities and expertise.
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Peer Reviewer 1; assesses methodological soundness, research design validity, and statistical rigor.
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Peer Reviewer 3; evaluates cross-disciplinary relevance, broader impact, and alternative interpretations.
Skill Claude CodeCodex
12-agent academic paper writing pipeline. 11 modes (full/plan/outline/revision/revision-coach/abstract/lit-review/format-convert/citation-check/disclosure/rebuttal-audit). 6 paper types, 5 citation formats, bilingual abstracts, LaTeX/DOCX-via-Pandoc/PDF output. Style Calibration + Writing Quality Check + Anti-Patterns…
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Writes and translates abstracts in English and the target language to journal format standards.
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Constructs the papers core argument and logical reasoning structure.
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Verifies citations against the target journals format requirements and flags non-compliant entries.
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Writes the full paper draft section by section from the structured outline and Paper Configuration Record.
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Formats the final manuscript output to target journal style requirements.
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Conducts the paper configuration interview and produces the Paper Configuration Record for downstream agents.
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Designs the literature search strategy and manages source selection for the paper.
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Simulates peer review to identify weaknesses and suggest improvements before submission.
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Parses reviewer or real-committee comments into source-accounted plans and response skeletons.
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Guides paper authors through Socratic questions to sharpen arguments and surface unstated assumptions.
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Designs the papers section architecture and detailed outline before drafting begins.
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Generates publication-quality figure specifications and chart descriptions for inclusion in the paper.