open science skills

48 tagged open science, measured the same way as everything else here.

Browse within: reproducible-research 29ai-for-science 24ai-research-tool 24local-first 24research-workbench 24biomodels 13bioinformatics 7computational-biology 7cryo-em 7emdb 7academic-research 5evidence-based-education 5lancedb 5reproducibility 5

figure-style

01

aipoch/open-science

Skill Claude CodeCodex

Publication-grade correctness and legibility rules for final-deliverable scientific figures, not exploratory plots. Use for a figure that will ship in a report, paper, export, or kept artifact. Covers data fidelity, label economy, color threading, chart choice, layout, and render-then-verify QA without imposing a…

3.3k 2d ago A 91 tokens original Apache-2.0

paper-narrative

02

aipoch/open-science

Skill Claude CodeCodex

Judge and reshape the story told by an entire paper figure deck. Use when writing or revising a paper to derive a grounded brief from the manuscript and captions, review the full deck as a handling editor, and hand an ordered figure arc to figure-composer.

3.3k 2d ago A 58 tokens original Apache-2.0

remote-compute-ssh

03

aipoch/open-science

Skill Claude CodeCodex

Evaluate and use SSH Remote Compute before choosing where to run GPU, high-memory, parallel, batch, model-inference, bioinformatics, or other long-running scientific work; supports short remote commands and asynchronous jobs with automatic harvest and analysis.

3.3k 2d ago A 53 tokens original Apache-2.0

add-pipeline-stage

04

calkit/calkit

Skill Claude CodeCodex

Add a single new stage to an existing Calkit pipeline. Use when the user invokes /calkit:add-pipeline-stage or asks to add a script, notebook, or command to the pipeline.

54 yesterday A 47 tokens original MIT

conventions

05

calkit/calkit

Skill Claude CodeCodex

Calkit conventions and foundational context. Load whenever working in a Calkit project—defines calkit.yaml structure, environments, pipeline stages, CLI commands, and version control conventions.

54 yesterday A 40 tokens original MIT

create-pipeline

06

calkit/calkit

Skill Claude CodeCodex

Convert an existing repo with ad hoc scripts into a fully reproducible Calkit pipeline. Use when the user invokes /calkit:create-pipeline or asks to make a project reproducible end-to-end.

54 yesterday A 47 tokens original MIT

BioSymphony/cryocore

Skill Claude CodeCodex

Use when reviewing CryoCore changes for public release safety, privacy, secret leakage, provider-cost risk, heavy biological data, license posture, or unsupported scientific claims.

5 yesterday A 40 tokens original MIT

cryocore-toolwatch

08

BioSymphony/cryocore

Skill Claude CodeCodex

Use when researching, triaging, or updating BioSymphony CryoCore tool, preprint, workflow, data-source, or license posture records.

5 yesterday A 36 tokens original MIT

cryocore

09

BioSymphony/cryocore

Skill Claude CodeCodex

Use when planning or executing BioSymphony CryoCore campaigns for cryo-EM raw processing, map/model validation, heterogeneity review, structural rendering, and provider-neutral cryo workflows.

5 yesterday A 42 tokens original MIT

zenodo-skill

10

Agents365-ai/zenodo-skill

Skill Claude CodeCodex

Use whenever the user mentions Zenodo, depositing or publishing research artifacts (datasets, software, papers, posters) to Zenodo, minting a DOI for a dataset/code release, uploading files to a Zenodo record, creating a new version of a Zenodo deposit, or searching Zenodo records. Covers the full Zenodo REST API…

2 3mo ago A 111 tokens

catalog-query-demo

13

skill-commons/skill-commons

Skill Claude CodeCodex

Demonstrate how an agent reads a local Skill Commons catalog snapshot without installing or executing a skill. Use only for schema and client-integration tests.

2 20d ago A 34 tokens original Apache-2.0

giovannifrontera/academic-research-prisma-wiki-rag

Skill Claude CodeCodex

Usa quando occorre progettare uno studio pilota o quasi-sperimentale nell'ambito delle scienze dell'educazione: Ed-Tech, psicopedagogia, pedagogia speciale e inclusiva, didattica disciplinare, valutazione educativa, formazione docenti, pedagogia generale — a qualsiasi livello scolastico (infanzia, primaria, secondaria…

2 2mo ago A 0 tokens AGPL-3.0

pipeline-ricerca

15

giovannifrontera/academic-research-prisma-wiki-rag

Skill Claude CodeCodex

Use when starting a new academic research project, switching between skills mid-workflow, or needing to know which files connect prisma-review, hybrid-rag, educational-pilot-design and pandoc-export. Reference for the complete PRISMA → RAG → Pilot → Preprint pipeline.

2 2mo ago A 61 tokens AGPL-3.0

prisma-review

16

giovannifrontera/academic-research-prisma-wiki-rag

Skill Claude CodeCodex

Use when conducting a systematic literature review using the PRISMA methodology. Triggers on: systematic review, literature review, PRISMA, database search strategy, inclusion/exclusion criteria, deduplication, screening, evidence synthesis. Available MCP servers: semantic-scholar, arxiv, pubmed, eric, openaire, core…

2 2mo ago A 0 tokens AGPL-3.0

rrdoctor-verify

17

Tom409114/research-repo-doctor

Skill Claude CodeCodex

Use rrdoctor as the deterministic, offline definition of done for preparing a research repository for Artifact Evaluation or public release.

1 1mo ago A 28 tokens original MIT

pocket-i-lab

18

yukakust/joinmultiplayer.ai

Skill Claude CodeCodex

Connect the current Codex task to a consented, redacted public experiment journal on joinmultiplayer.ai. Use when the user asks to start, continue, inspect, finish, or publicly document a Pocket i / joinmultiplayer experiment without leaving Codex. Do not use for ordinary private coding tasks or publish anything…

0 yesterday A 77 tokens original MIT