Medical Research Agent Skills is a library of agent instructions for medical and biomedical research, covering evidence analysis, study protocol design, data analysis, and academic writing. Researchers use it to guide compatible coding agents through common scientific workflows. The catalogue contains many of the library's skills and commands.
Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add aipoch/medical-research-skills --skill automated-soap-note-generatorgit clone --depth 1 https://github.com/aipoch/medical-research-skillsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/aipoch/medical-research-skills/automated-soap-note-generator)<a href="https://agentmods.dev/skills/aipoch/medical-research-skills/automated-soap-note-generator"><img src="https://agentmods.dev/badge/skills/aipoch/medical-research-skills/automated-soap-note-generator/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/aipoch/medical-research-skills/automated-soap-note-generator"><img src="https://agentmods.dev/badge/skills/aipoch/medical-research-skills/automated-soap-note-generator.svg" alt="Reviewed on agentmods" width="80" height="20"></a>- NVIDIA SkillSpector pass
What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00051 | $0.03803 |
| Opus 5 | $0.00026 | $0.01902 |
| Sonnet 5 | $0.00010 | $0.00761 |
| Haiku 4.5 | $0.00005 | $0.00380 |
Grade A, and why
automated-soap-note-generator scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 420 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Automated SOAP Note Generator
Quick Check
Use this command to verify that the packaged script entry point can be parsed before deeper execution.
python -m py_compile scripts/main.py
Audit-Ready Commands
Use these concrete commands for validation. They are intentionally self-contained and avoid placeholder paths.
python -m py_compile scripts/main.py
python scripts/main.py --help
python scripts/main.py --input "Audit validation sample with explicit symptoms, history, assessment, and next-step plan." --patient-id P12345 --provider "Dr. Smith" --format json
Workflow
- Confirm the user objective, required inputs, and non-negotiable constraints before doing detailed work.
- Validate that the request matches the documented scope and stop early if the task would require unsupported assumptions.
- Use the packaged script path or the documented reasoning path with only the inputs that are actually available.
- Return a structured result that separates assumptions, deliverables, risks, and unresolved items.
- If execution fails or inputs are incomplete, switch to the fallback path and state exactly what blocked full completion.
Overview
AI-powered clinical documentation tool that converts unstructured clinical input into professionally formatted SOAP notes compliant with medical documentation standards.
Key Capabilities:
- Intelligent Parsing: Extracts structured information from free-text clinical narratives
- SOAP Classification: Automatically categorizes content into Subjective, Objective, Assessment, Plan sections
- Medical Entity Recognition: Identifies symptoms, diagnoses, medications, procedures, and anatomical locations
- Temporal Analysis: Extracts timeline information (onset, duration, progression)
- Template Generation: Produces standardized SOAP format suitable for EHR integration
- Multi-modal Input: Accepts text dictation, transcripts, or clinical notes
What ships with it
6 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 9d ago First seen · 420 lines · 51 tokens per session scan A 56d140b9349a
automated-soap-note-generator is a skill published in the GitHub repository aipoch/medical-research-skills (1,860 stars, last pushed 1mo ago), licensed MIT. It adds 51 tokens to every session and 3,803 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.
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