crossref-lookup

crossref-lookup is a skill for Claude Code, Codex from fmschulz/omics-skills. It costs 37 tokens per session (1,118 once invoked), scanned A, original, MIT.

A citation lookup tool that uses Crossref, a public database of scholarly publication records, to check DOIs and retrieve reference details.

In plain words
What is it for?
Use it to validate DOI strings, find a DOI from a title, retrieve citation metadata, or audit a bibliography.
Why use it?
It helps correct incomplete or inaccurate citations and exposes ambiguous matches instead of silently choosing the wrong paper.

Skill for Claude CodeCodex

Written for Claude Code and Codex: shipped in a Claude Code plugin, but also agents/openai.yaml present.

Part of the omics-skills plugin — 34 skills, 4 agents shipped together

Good fit Use it to validate DOI strings, find a DOI from a title, retrieve citation metadata, or audit a bibliography.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/fmschulz/omics-skills/crossref-lookup
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add fmschulz/omics-skills --skill crossref-lookup
Clone the repo
git clone --depth 1 https://github.com/fmschulz/omics-skills

Made for: Claude Code, Codex.

Or install omics-skills, the plugin that ships this one along with the rest of its 34 skills, 4 agents.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for crossref-lookup

README.md
[![agentmods](https://agentmods.dev/badge/skills/fmschulz/omics-skills/crossref-lookup/github.svg)](https://agentmods.dev/skills/fmschulz/omics-skills/crossref-lookup)
Your own site
<a href="https://agentmods.dev/skills/fmschulz/omics-skills/crossref-lookup"><img src="https://agentmods.dev/badge/skills/fmschulz/omics-skills/crossref-lookup/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for crossref-lookup

Your own site · 80×15
<a href="https://agentmods.dev/skills/fmschulz/omics-skills/crossref-lookup"><img src="https://agentmods.dev/badge/skills/fmschulz/omics-skills/crossref-lookup.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 37 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,118 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00037 $0.01118
Opus 5.5 $0.00015 $0.00447
Sonnet 5.5 $0.00007 $0.00224
Haiku 4.5 $0.00004 $0.00112

Measured 22d ago against content hash 7a410d49f4a7, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

crossref-lookup scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 22d ago.

The scan reads SKILL.md. This mod also ships 1 executable file (scripts/lookup.py), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/crossref-lookup/SKILL.md · 86 lines

How it starts

The opening of the file, as written. The whole thing — 86 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Crossref Lookup

Validate DOIs, find DOIs from titles, and audit bibliographies against the Crossref REST API.

Instructions

  1. Run the bundled CLI, scripts/lookup. Paths below are relative to this skill's directory, installed at ~/.agents/skills/crossref-lookup.
  2. Choose the narrowest mode:
    • --doi validates or enriches one DOI.
    • --title returns ranked DOI candidates for a title (--rows, default 5).
    • --validate-file checks one DOI per line.
    • --audit-bibliography extracts DOIs from a .bib or plain-text file and checks each one.
  3. DOI inputs are normalized before lookup. 10.xxxx/..., doi:10.xxxx/..., and https://doi.org/10.xxxx/... are all accepted, and trailing BibTeX punctuation is removed.
  4. Pass --email only with an address the user gave for Crossref's polite pool. Never take an address from the conversation, git config, or system context; without one the CLI uses the public pool. The CLI spaces requests to stay within the limits Crossref reported on 2026-10-01: single-DOI lookups at 5 per second (10 with --email), title searches at 1 per second (3 with --email).
  5. When a title search returns several plausible records, show the candidates instead of choosing one silently.
  6. Crossref holds citation metadata, not full text. When exact wording, pagination, or publisher formatting matters, check the DOI landing page.
  7. Use --strict for audits that must fail on any invalid, missing, or unresolved record.

Quick Reference

Task Command
Validate a DOI scripts/lookup --doi 10.1038/nature12373
Search by title scripts/lookup --title "CRISPR-Cas9 genome editing" --rows 5
Validate a DOI list scripts/lookup --validate-file dois.txt
Audit a bibliography scripts/lookup --audit-bibliography refs.bib
Write the report to a file --output crossref-report.json (refuses to overwrite)
Polite pool --email [email protected]
Fail on any unresolved record --strict

Read the full file on GitHub · 86 lines

Files

What ships with it

3 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 22d ago Changed 7a410d49f4a7
  2. 23d ago Changed · -27 lines · +6 tokens per session cd968201ec61
  3. 1mo ago Changed · -2 lines 275e3060c20e
  4. 1mo ago First seen · 115 lines · 31 tokens per session scan A a272403d5e27

Subscribe to this mod's changes

crossref-lookup is a skill published in the GitHub repository fmschulz/omics-skills (11 stars, last pushed 23d ago), licensed MIT. It adds 37 tokens to every session and 1,118 once invoked, about $0.0001 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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