ammawla/encode-toolkit

MCP server and Claude Code plugin for the ENCODE Project: search, download and analyze ChIP-seq, ATAC-seq, RNA-seq, WGBS, Hi-C and CUT&RUN data with 20 tools, 47 skills and 7 Nextflow pipelines

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20d agoLast push, which is what freshness is scored on

AGPL-3.0Licence, which decides whether bodies are shown

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encode-toolkit

ammawla/encode-toolkit

Plugin Claude Code

Bundles 10 commands, 7 agents, 1 plugin · 402 tokens together

20 ENCODE API tools + 47 expert skills for genomics research. Search experiments, download files with MD5 verification, run pipelines, and cross-reference 14 databases.

not rated 21 changed 25d ago A tokens not measured AGPL-3.0