Scientific commands

SFETNI/Scientific-Writing-Skills-Claude-Code-Codex

Command Claude Code

Draft or improve the Discussion section using: argument flow review → claim calibration → reviewer perspective.

Mjvolk3/torchcell

Command Claude Code

We are writing the experimental pipeline for Dcell. It is very similar to the pipeline for the Dango model. We want to keep it similar to the Dango pipeline as possible. We want to record all of the same metrics, use the same code structure, etc.

yojiro253-del/BioForge

Command

Run a synthetic-biology research workflow - find papers, then extract organisms, genes, and methods.

zhyx12/projtool

Command

Read the experiment record (journal, findings, reports, run table) and propose the next 1-3 experiments with rationale and cost — the user decides, then execution goes through startruns/starttraining.

zamushwani/biomedical-ai-skills

Command Claude Code

Spatial transcriptomics analysis: loading, spatial QC, spatially variable genes, deconvolution, domains. Use for Visium, Xenium, MERSCOPE, or CosMx data.

zhangreling02-ai/3dslicer-claude-bridge

Command Claude Code

Complete multi-modal spine evaluation using all available imaging data.

Yaeshio/FreeCAD-MCP-For-YDGA

Command Claude Code

A command that saves an open FreeCAD document, a computer-aided design file, as both an FCStd file and a Python script in the projects/ folder.

Shigurex/boj_jstat_mcp

Command Claude Code

A command for retrieving and analysing Bank of Japan time-series statistics through connected tools. It guides the agent to find the right database and series, check their descriptions, and retrieve the data.