Borrowing it
Nothing to install: this file belongs to berntpopp/gencc-link. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.
curl -O https://raw.githubusercontent.com/berntpopp/gencc-link/main/AGENTS.mdgit clone --depth 1 https://github.com/berntpopp/gencc-linkWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/instructions/berntpopp/gencc-link/agents-md)<a href="https://agentmods.dev/instructions/berntpopp/gencc-link/agents-md"><img src="https://agentmods.dev/badge/instructions/berntpopp/gencc-link/agents-md/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/instructions/berntpopp/gencc-link/agents-md"><img src="https://agentmods.dev/badge/instructions/berntpopp/gencc-link/agents-md.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.01120 | $0.01120 |
| Opus 5.5 | $0.00448 | $0.00448 |
| Sonnet 5.5 | $0.00224 | $0.00224 |
| Haiku 4.5 | $0.00112 | $0.00112 |
Grade A, and why
gencc-link AGENTS.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 6d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 99 lines — stays where its author put it; the contents beside it link to each section on GitHub.
AGENTS.md
Shared repository instructions for agentic coding tools working in GenCC-Link.
Project
GenCC-Link is a Python FastAPI + MCP server that grounds gene-disease validity questions in the Gene Curation Coalition (GenCC) dataset. GenCC harmonizes curated gene-disease assertions (Definitive ... Refuted) from member organizations (ClinGen, Genomics England PanelApp, Orphanet, Ambry, Invitae, Illumina, and others). GenCC has no live API yet, so the server downloads the bulk submissions export and serves it from a local SQLite + FTS5 database; the analytical value-add is per-pair consensus and conflict detection across submitters.
Primary areas:
gencc_link/- Python package: config, models, data store, services, MCP codeingest/- download + parse + build the SQLite databasedata/- schema.sql, read-only repository, repository Protocol (base.py)services/- consensus aggregation, response shaping, orchestrationmcp/- facade, tools, capabilities, envelope, next_commands, resources
tests/- unit and integration tests; fixtures undertests/fixtures/docker/- Dockerfile and Compose deployment filesdocs/- architecture, usage, and design specs (docs/superpowers/).claude/skills/- repo-local Claude Code workflows for recurring tasks
Source Of Truth
- Use this file for shared repo-wide agent guidance.
- Keep
CLAUDE.mdlean and Claude-specific; it should reference this file. - Prefer
Makefiletargets over ad hoc commands. - Use
uv.lockas the dependency lock source of truth. - The GenCC export schema and classification ranks live in
gencc_link/constants.py; the SQLite schema ingencc_link/data/schema.sql.
Working Rules
- Do not revert or overwrite changes you did not make unless explicitly asked.
- Keep edits scoped to the task and avoid unrelated refactors.
- Prefer existing code patterns over new abstractions.
- Put tests under
tests/; do not create alternate test roots. - Use ASCII unless a file already requires non-ASCII content.
- Keep public hosted MCP tools read-only and research-use scoped.
- Respect the GenCC download quota (20/IP/day): use HEAD + conditional requests (ETag / Last-Modified); never poll the full export in a loop.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 6d ago Changed 6e0379357e6f
- 1mo ago First seen · 99 lines · 1,120 tokens per session scan A 58657341f78f
gencc-link AGENTS.md is an instructions file published in the GitHub repository berntpopp/gencc-link (0 stars, last pushed 3d ago), licensed MIT. It adds 1,120 tokens to every session, about $0.0045 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.
Other instructions, from other repositories
vscode buildNext.instructions.md
Working notes and architecture documentation for the new esbuild-based build system in build/next. Use when making changes to the new build pipeline (transpile/bundle commands, NLS plugin, source-map handling, resource copying, or self-hosting watch tasks).
next.js AGENTS.md
AGENTS.md instructions for vercel/next.js, covering next.js development guide, codebase structure, monorepo overview, core package: packages/next and other important packages.
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Instructions for microsoft/vscode, covering vs code oss third-party-notices pipeline, architecture, pipeline flow in ci, cache eligibility and rollout and applying the notice (cutover).
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AGENTS.md instructions for langchain-ai/langchain, covering global development guidelines for the langchain monorepo, corridor security analysis, project architecture and context, monorepo structure and development tools & commands.
vscode copilot-instructions.md
Copilot instructions for microsoft/vscode, covering vs code copilot instructions, project overview, root folders, core architecture (src/ folder) and built-in extensions (extensions/ folder).
vscode model-prompts.instructions.md
Model-specific prompt authoring and registry guidelines.