genefoundry-router: Instructions file for Claude Code

CLAUDE.md

genefoundry-router CLAUDE.md is an instructions file for Claude Code from berntpopp/genefoundry-router. It costs 163 tokens per session, scanned A, original, MIT.

A short Claude Code instruction file for GeneFoundry Router, the gateway that connects one interface to multiple biomedical data servers.

In plain words
What is it for?
It guides final checks, framework verification and maintenance of the router's tool naming and configuration.
Why use it?
It points Claude Code to the shared project rules and highlights framework details that may change between versions.

Instructions file for Claude Code

Written for Claude Code: the file is CLAUDE.md. Also seen: mentions CLAUDE.md; mentions Claude Code; mentions AGENTS.md.

This is berntpopp/genefoundry-router's own configuration. It tells Claude Code how to work on genefoundry-router itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything genefoundry-router configures →

Reuse

Borrowing it

Nothing to install: this file belongs to berntpopp/genefoundry-router. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/berntpopp/genefoundry-router/main/CLAUDE.md
Clone the repo
git clone --depth 1 https://github.com/berntpopp/genefoundry-router

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for genefoundry-router CLAUDE.md

README.md
[![agentmods](https://agentmods.dev/badge/instructions/berntpopp/genefoundry-router/claude-md/github.svg)](https://agentmods.dev/instructions/berntpopp/genefoundry-router/claude-md)
Your own site
<a href="https://agentmods.dev/instructions/berntpopp/genefoundry-router/claude-md"><img src="https://agentmods.dev/badge/instructions/berntpopp/genefoundry-router/claude-md/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for genefoundry-router CLAUDE.md

Your own site · 80×15
<a href="https://agentmods.dev/instructions/berntpopp/genefoundry-router/claude-md"><img src="https://agentmods.dev/badge/instructions/berntpopp/genefoundry-router/claude-md.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 163 This file is loaded in full into every session.
When invoked 163 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00163 $0.00163
Opus 5 $0.00081 $0.00081
Sonnet 5 $0.00033 $0.00033
Haiku 4.5 $0.00016 $0.00016

Measured 9d ago against content hash 818448f753b6, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-09, from the pricing page.

Security

Grade A, and why

genefoundry-router CLAUDE.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

CLAUDE.md · 15 lines

What it actually says

CLAUDE.md

@AGENTS.md

Claude Code entrypoint only:

  • Use AGENTS.md for shared repository instructions.
  • Keep Claude-specific additions here short and tool-specific.
  • Prefer make ci-local before final handoff (runs lint-loc, the 600-LOC budget).
  • FastMCP 3.x symbols are post-training-cutoff and fast-moving — verify imports against the installed package before relying on them (see the import smoke in docs/plans/2026-06-13-genefoundry-router-implementation.md, Task 2).
  • When a backend's source repo adopts Tool-Naming Standard v1, delete its transform block from servers.yaml rather than adding router-side workarounds.
Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 9d ago First seen · 15 lines · 163 tokens per session scan A 818448f753b6

Subscribe to this mod's changes

genefoundry-router CLAUDE.md is an instructions file published in the GitHub repository berntpopp/genefoundry-router (4 stars, last pushed 2d ago), licensed MIT. It adds 163 tokens to every session, about $0.0008 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

Related

Other instructions, from other repositories

next.js AGENTS.md

AGENTS.md instructions for vercel/next.js, covering next.js development guide, codebase structure, monorepo overview, core package: packages/next and other important packages.

vercel/next.js · 7,296 tokens

codex AGENTS.md

AGENTS.md instructions for openai/codex, covering rust/codex-rs, the codex-core crate, code review rules, crate api surface and model visible context.

openai/codex · 5,153 tokens

vscode buildNext.instructions.md

Working notes and architecture documentation for the new esbuild-based build system in build/next. Use when making changes to the new build pipeline (transpile/bundle commands, NLS plugin, source-map handling, resource copying, or self-hosting watch tasks).

microsoft/vscode · 6,785 tokens

vscode oss-third-party-notices.instructions.md

Instructions for microsoft/vscode, covering vs code oss third-party-notices pipeline, architecture, pipeline flow in ci, applying the notice (cutover) and fallback chain (never fail the build).

microsoft/vscode · 5,001 tokens

langchain AGENTS.md

AGENTS.md instructions for langchain-ai/langchain, covering global development guidelines for the langchain monorepo, corridor security analysis, project architecture and context, monorepo structure and development tools & commands.

langchain-ai/langchain · 4,469 tokens

deepseek-harness AGENTS.md

AGENTS.md instructions for deepseek-ai/deepseek-harness, covering agents.md, pre-stable apis and released session data, repository layout, commands and host sandbox failures.

deepseek-ai/deepseek-harness · 3,737 tokens