Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add instructions/biocontext-ai/protocol-mcp/claude-mdgit clone --depth 1 https://github.com/biocontext-ai/protocol-mcpWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/instructions/biocontext-ai/protocol-mcp/claude-md)<a href="https://agentmods.dev/instructions/biocontext-ai/protocol-mcp/claude-md"><img src="https://agentmods.dev/badge/instructions/biocontext-ai/protocol-mcp/claude-md.svg" alt="Measured on agentmods" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.00005 | $0.00005 |
| Opus 5 | $0.00003 | $0.00003 |
| Sonnet 5 | $0.00001 | $0.00001 |
| Haiku 4.5 | $0.00001 | $0.00001 |
Grade A, and why
protocol-mcp CLAUDE.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 4d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
This is a copy
100% identical to deepseek-harness CLAUDE.md — 3 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.
What it actually says
@AGENTS.md
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 4d ago First seen · 2 lines · 5 tokens per session scan A 336cc4fbf19b
protocol-mcp CLAUDE.md is an instructions file published in the GitHub repository biocontext-ai/protocol-mcp (2 stars, last pushed 6mo ago), licensed Apache-2.0. It adds 5 tokens to every session, about $0.0000 per session on Opus 5. A static security scan graded it A with 0 findings. It is 100% identical to deepseek-harness CLAUDE.md, differing in 3 lines, and is treated as a copy.
Other instructions, from other repositories
SutroYaro GEMINI.md
Instructions for cybertronai/SutroYaro, covering gemini.md - sutro group research workspace, project context, read these first, core concepts and current best methods.
braina GEMINI.md
Instructions for brainets/braina, covering project: braina (brain interaction analysis), 1. project context & purpose, 2. commands, verify environment (all core dependencies) and run the verification test suite for frites + hoi.
cdxml-toolkit-community AGENTS.md
AGENTS.md instructions for ZiChenWang114514/cdxml-toolkit-community, a project described as: Community CDXML toolkit and MCP server.
research-automation CLAUDE.md
Instructions for lucafusarbassini/research-automation, covering ricet - research automation framework, project overview, claude-flow mcp, workflow habits and file organization.
shannon-prover CLAUDE.md
Claude Code instructions for SkyShannonProver/shannon-prover, covering shannon prover: claude entry point, current boundary, easycrypt environment, eval safety and current documentation.
SciCrucible CLAUDE.md
Claude Code instructions for Xinyang-Li666/SciCrucible, covering 科学知识库, 知识库结构, 可用命令, 项目目录 and 工作原则.