Borrowing it
Nothing to install: this file belongs to donbr/lifesciences-research. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.
curl -O https://raw.githubusercontent.com/donbr/lifesciences-research/main/CLAUDE.mdgit clone --depth 1 https://github.com/donbr/lifesciences-researchWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/instructions/donbr/lifesciences-research/claude-md)<a href="https://agentmods.dev/instructions/donbr/lifesciences-research/claude-md"><img src="https://agentmods.dev/badge/instructions/donbr/lifesciences-research/claude-md/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/instructions/donbr/lifesciences-research/claude-md"><img src="https://agentmods.dev/badge/instructions/donbr/lifesciences-research/claude-md.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.04822 | $0.04822 |
| Opus 5 | $0.02411 | $0.02411 |
| Sonnet 5 | $0.00964 | $0.00964 |
| Haiku 4.5 | $0.00482 | $0.00482 |
Grade A, and why
lifesciences-research CLAUDE.md scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Makes network callslowCapability
Not a fault in itself. Listed so you know the mod talks to something, and to what.
- ClinicalTrials.gov server v0.1.0 - ✅ Complete (3 tools, 13 unit tests passing | Manual curl testing required due to Cloudflare blocking) How it starts
The opening of the file, as written. The whole thing — 347 lines — stays where its author put it; the contents beside it link to each section on GitHub.
CLAUDE.md
This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.
Project Overview
FastMCP wrappers for essential life sciences APIs, enabling LLM agents to query biological databases for drug discovery and repurposing.
Status:
- HGNC server v0.1.0 - ✅ Complete (7 integration tests passing)
- UniProt server v0.1.0 - ✅ Complete (12 integration tests passing, all 4 User Stories)
- ChEMBL server v0.1.0 - ✅ Complete (62 tests: 20 integration + 42 unit, PR #10 merged)
- Open Targets server v0.1.0 - ✅ Complete (9 tests, PR #11 merged)
- DrugBank server v0.1.0 - ⛔ BLOCKED (33 unit tests, PR #12 open - API key required)
- STRING server v0.1.0 - ✅ Complete (3 tools, 11 integration tests passing)
- BioGRID server v0.1.0 - ✅ Complete (11 integration tests passing, all 4 User Stories)
- Ensembl server v0.1.0 - ✅ Complete (86 tests: 62 unit + 24 integration)
- Entrez server v0.1.0 - ✅ Complete (58 tests: 38 unit + 20 integration)
- PubChem server v0.1.0 - ✅ Complete (85 tests: 66 unit + 19 integration)
- IUPHAR/GtoPdb server v0.1.0 - ✅ Complete (59 tests: 48 integration + 11 unit, all 5 User Stories)
- WikiPathways server v0.1.0 - ✅ Complete (4 tools, 17 integration tests passing)
- ClinicalTrials.gov server v0.1.0 - ✅ Complete (3 tools, 13 unit tests passing | Manual curl testing required due to Cloudflare blocking)
Platform Skills:
- lifesciences-crispr - ✅ Complete (BioGRID ORCS 5-phase synthetic lethality validation workflow)
- lifesciences-genomics - ✅ Complete (Ensembl, NCBI, HGNC curl endpoints)
- lifesciences-proteomics - ✅ Complete (UniProt, STRING, BioGRID curl endpoints)
- lifesciences-pharmacology - ✅ Complete (ChEMBL, PubChem, DrugBank, IUPHAR curl endpoints)
- lifesciences-clinical - ✅ Complete (Open Targets, ClinicalTrials.gov curl endpoints)
- lifesciences-graph-builder - ✅ Complete (Fuzzy-to-Fact orchestration workflow)
Key Documentation
| Document | Purpose |
|---|---|
docs/platform-engineering-rationale.md |
Start here - WHY we use Platform Engineering for agents |
docs/competency-questions/competency-questions-catalog.md |
Research questions catalog for knowledge graph building |
docs/adr/accepted/adr-001-v1.4.md |
Binding architecture specification (schemas, protocols, error codes) |
docs/adr/accepted/adr-002-v1.0.md |
Project Skills (the "Hardware") |
docs/adr/accepted/adr-003-v1.0.md |
SpecKit SDLC (the "Operating System") |
docs/adr/accepted/adr-004-v1.0.md |
FastMCP Lifecycle Management (shutdown hook antipattern) |
docs/adr/accepted/adr-005-v1.0.md |
Git Worktrees for Parallel Development |
docs/adr/accepted/adr-006-v1.0.md |
Single Writer Package Architecture |
docs/speckit-standard-prompt.md |
Standard prompt template for new MCP servers |
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 9d ago First seen · 347 lines · 4,822 tokens per session scan A e42f7e501889
lifesciences-research CLAUDE.md is an instructions file published in the GitHub repository donbr/lifesciences-research (7 stars, last pushed 6d ago), licensed MIT. It adds 4,822 tokens to every session, about $0.0241 per session on Opus 5. A static security scan graded it A with 1 finding (makes network calls). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.
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