agentmods.dev

robust-lit-review: Instructions file for Claude Code

CLAUDE.md

robust-lit-review CLAUDE.md is an instructions file for Claude Code from htlin222/robust-lit-review. It costs 492 tokens per session, scanned A, original, MIT.

Project instructions for a literature-review application. A literature review is a structured search and summary of published research.

In plain words
What is it for?
They help run reviews on a topic, refine search terms, check DOIs, create BibTeX references, and render Quarto files as PDF or Word documents.
Why use it?
They describe how to search several research databases, filter and validate results, and produce review documents with references.

Instructions file for Claude Code

Written for Claude Code: the file is CLAUDE.md.

This is htlin222/robust-lit-review's own configuration. It tells Claude Code how to work on robust-lit-review itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything robust-lit-review configures →

not rated 55repo 3mo ago A scan 492 tokens original MIT
View source ↗ htlin222/robust-lit-review
Reuse

Borrowing it

Nothing to install: this file belongs to htlin222/robust-lit-review. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/htlin222/robust-lit-review/main/CLAUDE.md
Clone the repo
git clone --depth 1 https://github.com/htlin222/robust-lit-review

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for robust-lit-review CLAUDE.md

README.md
[![agentmods](https://agentmods.dev/badge/instructions/htlin222/robust-lit-review/claude-md/github.svg)](https://agentmods.dev/instructions/htlin222/robust-lit-review/claude-md)
Your own site
<a href="https://agentmods.dev/instructions/htlin222/robust-lit-review/claude-md"><img src="https://agentmods.dev/badge/instructions/htlin222/robust-lit-review/claude-md/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for robust-lit-review CLAUDE.md

Your own site · 80×15
<a href="https://agentmods.dev/instructions/htlin222/robust-lit-review/claude-md"><img src="https://agentmods.dev/badge/instructions/htlin222/robust-lit-review/claude-md.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 492 This file is loaded in full into every session.
When invoked 492 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00492 $0.00492
Opus 5 $0.00246 $0.00246
Sonnet 5 $0.00098 $0.00098
Haiku 4.5 $0.00049 $0.00049

Measured 9d ago against content hash 5ab2040b7fc5, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-08, from the pricing page.

Security

Grade A, and why

robust-lit-review CLAUDE.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

CLAUDE.md · 57 lines

What it actually says

Robust Literature Review Pipeline

Overview

Automated systematic literature review pipeline that searches Scopus, PubMed, and Embase, filters by journal quality (CiteScore/SJR), validates DOIs, and generates publication-ready Quarto documents with BibTeX references.

Skills

  • /lit-review — Run the complete pipeline for a topic
  • /brainstorm-topic — Brainstorm and refine search terms before running

Project Structure

src/litreview/
  clients/        — API clients (Scopus, PubMed, Embase, Unpaywall, Zotero)
  pipeline/       — Orchestrator + Quarto renderer
  utils/          — BibTeX generator, DOI validator, statistics
  cli.py          — Typer CLI interface
  config.py       — Environment-based configuration
  models.py       — Pydantic data models
output/           — Generated review files (.qmd, .bib, .pdf, .docx)
templates/        — Quarto templates
.github/workflows/ — GitHub Actions for render + release

Commands

# Install
uv venv && source .venv/bin/activate && uv pip install -e ".[dev]"

# Run review
lit-review review "topic" --term "term1" --target 50 --min-citescore 3.0

# Validate DOIs in existing BibTeX
lit-review validate output/references.bib

# Check API config
lit-review check-config

Environment Variables (in .env)

  • SCOPUS_API_KEY — Elsevier/Scopus API key
  • PUBMED_API_KEY — NCBI E-utilities API key
  • EMBASE_API_KEY — Elsevier/Embase API key
  • UNPAYWALL_EMAIL — Email for Unpaywall API
  • ZOTERO_API_KEY — Zotero API key
  • ZOTERO_LIBRARY_TYPE — "user" or "group"
  • ZOTERO_LIBRARY_ID — Zotero library ID
  • ZOTERO_COLLECTION_KEY — Target collection key

Quality Standards

  • Only include articles from Q1/Q2 journals (CiteScore >= 3.0)
  • Every DOI must be validated via doi.org handle API
  • All URLs checked for accessibility
  • PRISMA-compliant methodology reporting
  • APA citation format via CSL
Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 9d ago First seen · 57 lines · 492 tokens per session scan A 5ab2040b7fc5

Subscribe to this mod's changes

robust-lit-review CLAUDE.md is an instructions file published in the GitHub repository htlin222/robust-lit-review (55 stars, last pushed 3mo ago), licensed MIT. It adds 492 tokens to every session, about $0.0025 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Researchliterature-reviewpubmedquartoscopussystematic-review
Related

Other instructions, from other repositories

next.js AGENTS.md

AGENTS.md instructions for vercel/next.js, covering next.js development guide, codebase structure, monorepo overview, core package: packages/next and other important packages.

vercel/next.js · 7,296 tokens

codex AGENTS.md

AGENTS.md instructions for openai/codex, covering rust/codex-rs, the codex-core crate, code review rules, crate api surface and model visible context.

openai/codex · 5,153 tokens

vscode buildNext.instructions.md

Working notes and architecture documentation for the new esbuild-based build system in build/next. Use when making changes to the new build pipeline (transpile/bundle commands, NLS plugin, source-map handling, resource copying, or self-hosting watch tasks).

microsoft/vscode · 6,785 tokens

vscode oss-third-party-notices.instructions.md

Instructions for microsoft/vscode, covering vs code oss third-party-notices pipeline, architecture, pipeline flow in ci, applying the notice (cutover) and fallback chain (never fail the build).

microsoft/vscode · 5,001 tokens

langchain AGENTS.md

AGENTS.md instructions for langchain-ai/langchain, covering global development guidelines for the langchain monorepo, corridor security analysis, project architecture and context, monorepo structure and development tools & commands.

langchain-ai/langchain · 4,469 tokens

spec-kit AGENTS.md

AGENTS.md instructions for github/spec-kit, covering agents.md, about spec kit and specify, quickstart — add a new integration in 5 steps, integration architecture and integrationmanifest — file tracking.

github/spec-kit · 7,104 tokens