htlin222

htlin222/meta-pipe

Skill Claude CodeCodex

Interactive brainstorming to develop a meta-analysis topic. Use when user wants to explore ideas, refine a topic, or needs help formulating a research question.

htlin222/meta-pipe

Skill Claude CodeCodex

Validate and maintain module registry. Use after adding new scripts, features, or modules to ensure proper documentation and integration.

htlin222/meta-pipe

Skill Claude CodeCodex

Share your completed meta-analysis project to the htlin222/meta-pipe GitHub Discussions board. Use when a project reaches a milestone (analysis complete, manuscript drafted) and the user wants to showcase their work.

htlin222/meta-pipe

Instructions file CodexOpenCode

AGENTS.md instructions for htlin222/meta-pipe, covering agent instructions, quick start, example: completed meta-analysis, 📁 project structure (important) and pipeline stages & skills.

htlin222/meta-pipe

Instructions file

Claude Code instructions for htlin222/meta-pipe, a project described as: Claude Code-powered end-to-end meta-analysis automation: AI-assisted literature review, screening, extraction, analysis, and manuscript generation for systematic reviews and clinical evidence synthesis.

htlin222/meta-pipe

Skill Claude CodeCodex

Orchestrate agent team for meta-analysis pipeline. Creates team, spawns teammates, manages task list and handoffs between pipeline stages.

htlin222/meta-pipe

Skill Claude CodeCodex

Define extraction schema, extract study data from full texts, and store it in a structured database for meta-analysis. Use when moving from full-text collection to statistical analysis.

htlin222/meta-pipe

Skill Claude CodeCodex

End-to-end AI-assisted meta-analysis pipeline orchestration from TOPIC.txt to final manuscript and reviewer responses. Use when the user provides a topic and wants the full meta-analysis workflow, tracking, and final paper.

htlin222/meta-pipe

Skill Claude CodeCodex

Collect and manage full-text PDFs for included studies, track provenance, and prepare documents for extraction. Use when moving from screening to data extraction.

htlin222/meta-pipe

Skill Claude CodeCodex

Draft and render a meta-analysis manuscript with Quarto using an IMRaD structure and embedded figures/tables. Use when preparing the final paper from analysis outputs.

htlin222/meta-pipe

Skill Claude CodeCodex

Run statistical meta-analysis in R with renv, generate effect estimates, heterogeneity, and publication bias diagnostics, and export figures and tables. Use when analyzing extracted study data.

htlin222/meta-pipe

Skill Claude CodeCodex

Act as Reviewer 1 and Reviewer 2 for a meta-analysis manuscript, checking rigor, reproducibility, and reporting compliance. Use when validating the final paper before submission.

htlin222/meta-pipe

Skill Claude CodeCodex

Publication-quality checks and enhancements for high-impact journal submissions, including PRISMA/MOOSE reporting, robust meta-analysis diagnostics (Hartung-Knapp, prediction intervals, influence), GRADE Summary of Findings, claim audits, and cross-reference validation. Use when preparing the final manuscript and QA…

htlin222/meta-pipe

Skill Claude CodeCodex

Perform title and abstract screening, apply inclusion and exclusion criteria, and assess study quality or risk of bias. Use when selecting eligible studies for meta-analysis.

htlin222/meta-pipe

Skill Claude CodeCodex

Conduct literature searches for meta-analysis using Python with uv, query PubMed and other databases, deduplicate results, and store round-based bibliographies with notes. Use when building or updating the evidence corpus.

htlin222/meta-pipe

Skill Claude CodeCodex

Intake a meta-analysis topic from TOPIC.txt, translate it into a PICO or PECO protocol, and define eligibility, outcomes, and search scope. Use when starting a new meta-analysis project or refining a research question.

htlin222/openevidence-mcp

Skill Claude CodeCodex

Install, update, clean up, uninstall, or check the status of openevidence-mcp on this machine. Use when the user wants to set up openevidence-mcp, update to the latest release, register/unregister the MCP server with Claude/Codex, reap stray relay daemons, or verify the install. Trigger phrases include "install…

htlin222/openevidence-mcp

Skill Claude CodeCodex

Implement OpenEvidence rate limiting, backoff, and request optimization. Use when handling rate limit errors, implementing retry logic, or optimizing API request throughput for clinical queries. Trigger with phrases like "openevidence rate limit", "openevidence throttling", "openevidence 429", "openevidence retry"…

htlin222/openevidence-mcp

Skill Claude CodeCodex

Query OpenEvidence (clinical evidence assistant) without an MCP server. Closely mirrors the openevidence-mcp tool surface - check auth, list question history, fetch an article, or ask a new question (with optional follow-up thread). Use when the user asks medical / evidence-based clinical questions, references…

htlin222/robust-lit-review

Skill Claude CodeCodex

Brainstorm and refine research topics with comprehensive search term generation for literature review.

htlin222/robust-lit-review

Skill Claude CodeCodex

Appraise a CLAIM (e.g. a popular diet or health product) — decompose into PICO sub-questions, run a Q1/post-2016/CrossRef-verified systematic review per question, GRADE each, cross-check with OpenEvidence, and ship a verdict-style bilingual site to Cloudflare Pages.

htlin222/robust-lit-review

Skill Claude CodeCodex

World-class automated literature review pipeline - the single entry point for all lit review operations (brainstorm, search, review, render).

htlin222/robust-lit-review

Instructions file

Instructions for htlin222/robust-lit-review, covering robust literature review pipeline, skills, project structure, commands and install.

htlin222/zh-ebn-report-skill

Skill Claude CodeCodex

A writing coach for Taiwanese nurses preparing evidence-based nursing reports, which use research findings to guide clinical care. It covers literature reports and case analyses for nursing advancement levels N1–N4.