htlin222/meta-pipe

Claude Code-powered end-to-end meta-analysis automation: AI-assisted literature review, screening, extraction, analysis, and manuscript generation for systematic reviews and clinical evidence synthesis

This repository also configures its own agents. See what meta-pipe tells them →

147Stars on the repository
19Mods indexed here, across every type
25d agoLast push, which is what freshness is scored on
customA LICENSE file GitHub cannot name, so bodies are not copied

ma-agent-teams

01

htlin222/meta-pipe

Skill Claude CodeCodex

Orchestrate agent team for meta-analysis pipeline. Creates team, spawns teammates, manages task list and handoffs between pipeline stages.

not rated 147 +6 25d ago A 32 tokens

ma-data-extraction

02

htlin222/meta-pipe

Skill Claude CodeCodex

Define extraction schema, extract study data from full texts, and store it in a structured database for meta-analysis. Use when moving from full-text collection to statistical analysis.

not rated 147 +6 25d ago A 38 tokens

ma-end-to-end

03

htlin222/meta-pipe

Skill Claude CodeCodex

End-to-end AI-assisted meta-analysis pipeline orchestration from TOPIC.txt to final manuscript and reviewer responses. Use when the user provides a topic and wants the full meta-analysis workflow, tracking, and final paper.

not rated 147 +6 25d ago A 47 tokens

htlin222/meta-pipe

Skill Claude CodeCodex

Collect and manage full-text PDFs for included studies, track provenance, and prepare documents for extraction. Use when moving from screening to data extraction.

not rated 147 +6 25d ago A 33 tokens

htlin222/meta-pipe

Skill Claude CodeCodex

Draft and render a meta-analysis manuscript with Quarto using an IMRaD structure and embedded figures/tables. Use when preparing the final paper from analysis outputs.

not rated 147 +6 25d ago A 39 tokens

ma-meta-analysis

06

htlin222/meta-pipe

Skill Claude CodeCodex

Run statistical meta-analysis in R with renv, generate effect estimates, heterogeneity, and publication bias diagnostics, and export figures and tables. Use when analyzing extracted study data.

not rated 147 +6 25d ago A 39 tokens

ma-peer-review

07

htlin222/meta-pipe

Skill Claude CodeCodex

Act as Reviewer 1 and Reviewer 2 for a meta-analysis manuscript, checking rigor, reproducibility, and reporting compliance. Use when validating the final paper before submission.

not rated 147 +6 25d ago A 38 tokens

htlin222/meta-pipe

Skill Claude CodeCodex

Publication-quality checks and enhancements for high-impact journal submissions, including PRISMA/MOOSE reporting, robust meta-analysis diagnostics (Hartung-Knapp, prediction intervals, influence), GRADE Summary of Findings, claim audits, and cross-reference validation. Use when preparing the final manuscript and QA…

not rated 147 +6 25d ago A 64 tokens

htlin222/meta-pipe

Skill Claude CodeCodex

Perform title and abstract screening, apply inclusion and exclusion criteria, and assess study quality or risk of bias. Use when selecting eligible studies for meta-analysis.

not rated 147 +6 changed 24d ago A 35 tokens

htlin222/meta-pipe

Skill Claude CodeCodex

Conduct literature searches for meta-analysis using Python with uv, query PubMed and other databases, deduplicate results, and store round-based bibliographies with notes. Use when building or updating the evidence corpus.

not rated 147 +6 changed 24d ago A 46 tokens

ma-topic-intake

11

htlin222/meta-pipe

Skill Claude CodeCodex

Intake a meta-analysis topic from TOPIC.txt, translate it into a PICO or PECO protocol, and define eligibility, outcomes, and search scope. Use when starting a new meta-analysis project or refining a research question.

not rated 147 +6 25d ago A 51 tokens

htlin222/meta-pipe

Skill Claude CodeCodex

Run network meta-analysis in R with gemtc (Bayesian, primary) and netmeta (frequentist, sensitivity), generate network graphs, league tables, SUCRA rankings, inconsistency diagnostics, and CINeMA GRADE assessment. Use when comparing ≥3 treatments with direct and indirect evidence.

not rated 147 +6 25d ago A 65 tokens

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