htlin222/meta-pipe

htlin222/meta-pipe

Skill Claude CodeCodex

Interactive brainstorming to develop a meta-analysis topic. Use when user wants to explore ideas, refine a topic, or needs help formulating a research question.

htlin222/meta-pipe

Skill Claude CodeCodex

Validate and maintain module registry. Use after adding new scripts, features, or modules to ensure proper documentation and integration.

htlin222/meta-pipe

Skill Claude CodeCodex

Share your completed meta-analysis project to the htlin222/meta-pipe GitHub Discussions board. Use when a project reaches a milestone (analysis complete, manuscript drafted) and the user wants to showcase their work.

htlin222/meta-pipe

Skill Claude CodeCodex

Orchestrate agent team for meta-analysis pipeline. Creates team, spawns teammates, manages task list and handoffs between pipeline stages.

htlin222/meta-pipe

Skill Claude CodeCodex

Define extraction schema, extract study data from full texts, and store it in a structured database for meta-analysis. Use when moving from full-text collection to statistical analysis.

htlin222/meta-pipe

Skill Claude CodeCodex

End-to-end AI-assisted meta-analysis pipeline orchestration from TOPIC.txt to final manuscript and reviewer responses. Use when the user provides a topic and wants the full meta-analysis workflow, tracking, and final paper.

htlin222/meta-pipe

Skill Claude CodeCodex

Collect and manage full-text PDFs for included studies, track provenance, and prepare documents for extraction. Use when moving from screening to data extraction.

htlin222/meta-pipe

Skill Claude CodeCodex

Draft and render a meta-analysis manuscript with Quarto using an IMRaD structure and embedded figures/tables. Use when preparing the final paper from analysis outputs.

htlin222/meta-pipe

Skill Claude CodeCodex

Run statistical meta-analysis in R with renv, generate effect estimates, heterogeneity, and publication bias diagnostics, and export figures and tables. Use when analyzing extracted study data.

htlin222/meta-pipe

Skill Claude CodeCodex

Act as Reviewer 1 and Reviewer 2 for a meta-analysis manuscript, checking rigor, reproducibility, and reporting compliance. Use when validating the final paper before submission.

htlin222/meta-pipe

Skill Claude CodeCodex

Publication-quality checks and enhancements for high-impact journal submissions, including PRISMA/MOOSE reporting, robust meta-analysis diagnostics (Hartung-Knapp, prediction intervals, influence), GRADE Summary of Findings, claim audits, and cross-reference validation. Use when preparing the final manuscript and QA…

htlin222/meta-pipe

Skill Claude CodeCodex

Perform title and abstract screening, apply inclusion and exclusion criteria, and assess study quality or risk of bias. Use when selecting eligible studies for meta-analysis.

htlin222/meta-pipe

Skill Claude CodeCodex

Conduct literature searches for meta-analysis using Python with uv, query PubMed and other databases, deduplicate results, and store round-based bibliographies with notes. Use when building or updating the evidence corpus.

htlin222/meta-pipe

Skill Claude CodeCodex

Intake a meta-analysis topic from TOPIC.txt, translate it into a PICO or PECO protocol, and define eligibility, outcomes, and search scope. Use when starting a new meta-analysis project or refining a research question.