claude-academic-research: Instructions file for Claude Code

CLAUDE.md

claude-academic-research CLAUDE.md is an instructions file for Claude Code from mronkko/claude-academic-research. It costs 7,512 tokens per session, scanned B, original, MIT.

Repository rules for an academic-research plugin for Claude Code and Antigravity. It describes a marketplace repository that contains research workflows, scripts, templates, and other plugins.

In plain words
What is it for?
Use them when changing academic-research workflows, plugin marketplace entries, scripts, templates, or editorial tools.
Why use it?
They explain which files affect downstream research agents and where deferred development ideas are recorded.

Instructions file for Claude Code

Written for Claude Code: ${CLAUDE_PLUGIN_ROOT} variable. Also seen: reads .claude/ paths; mentions .claude-plugin; mentions CLAUDE.md.

This is mronkko/claude-academic-research's own configuration. It tells Claude Code how to work on claude-academic-research itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything claude-academic-research configures →

Runs only inside a plugin — its command needs a path that Claude Code sets for a plugin’s own hooks and for nothing else, and the catalogue could not identify which plugin ships it.

Reuse

Borrowing it

Nothing to install: this file belongs to mronkko/claude-academic-research. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/mronkko/claude-academic-research/main/CLAUDE.md
Clone the repo
git clone --depth 1 https://github.com/mronkko/claude-academic-research

Made for: Claude Code.

Wrote this? Show the measurements

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README.md
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Per session 7,512 This file is loaded in full into every session.
When invoked 7,512 The same file — it is already loaded in full.
Security scan B 2 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.07512 $0.07512
Opus 5.5 $0.03005 $0.03005
Sonnet 5.5 $0.01502 $0.01502
Haiku 4.5 $0.00751 $0.00751

Measured 13d ago against content hash 0e226352c503, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade B, and why

claude-academic-research CLAUDE.md scanned grade B with 2 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 13d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Reads agent configuration directoriesmediumAgent snooping

.claude/, .codex/, .gemini/ hold keys, settings and other credentials a mod has no legitimate need for.

- **Project-local artefacts**: scripts and skills write run-outputs under `.claude/<scope>/` for transient internals (e.g. `.claude/audit/`) and under top-level visible directories for outputs the user is expected to fin

Makes network callslowCapability

Not a fault in itself. Listed so you know the mod talks to something, and to what.

- `scripts/pipelines/http_client.py` — shared `requests.Session` with `urllib3.Retry` + `tenacity` wrappers. **Every outbound HTTP call in `scripts/pipelines/` goes through a session from `build_session()`** — either the
CLAUDE.md · 138 lines

How it starts

The opening of the file, as written. The whole thing — 138 lines — stays where its author put it; the contents beside it link to each section on GitHub.

CLAUDE.md

This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.

Deferred development ideas — things consciously not done yet but worth revisiting — live in BACKLOG.md. Consult it before starting non-trivial work; the current item may already be captured there with context for why it was deferred.

What this repo is

An academic research plugin for Claude Code and Antigravity — not an application. It ships skills (prose rule-books), pipeline scripts, and templates for academic-research workflows. Claude Code users install via /plugin marketplace add mronkko/claude-academic-research, while Antigravity users install via agy plugin install <url>. Anything you change here is consumed by downstream agentic instances in user projects.

This is primarily a personal-use project. The author is the main user, and that changes the working norm: commit to main directly, and accept that main may be temporarily broken. A red main here is not an incident — do not revert someone else's commit to green it, do not open a branch purely to avoid breaking it, and do not stop mid-task to stabilise something you were not asked to touch. Fix forward. The one cost worth knowing is that CI (ruff check scripts tests templates editorial-tools mcp then pytest tests -v, lint a hard gate) goes red on push and stays red until the next commit, so run both locally when it is cheap; that is courtesy to the next session, not a gate you must pass before committing.

The repo is a marketplace hosting more than one plugin. .claude-plugin/marketplace.json lists them. The main plugin, academic-research, is sourced at the repo root (./) and is what most of this CLAUDE.md describes. A second, smaller plugin, editorial-tools, lives under editorial-tools/ with its own .claude-plugin/plugin.json and skills/ — it ships the suggesting-reviewers skill (peer-reviewer suggestion for journal editors/AEs, with a bundled ORM editorial-board roster). The two are independent installs: the root plugin only scans ./skills/, so editorial-tools/ does not leak into it, and users who install only academic-research never load the editorial skill. Do not assume one-plugin-per-repo.

Read the full file on GitHub · 138 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 13d ago Changed · +54 tokens per session 0e226352c503
  2. 21d ago Changed · +9 lines · +2,141 tokens per session b9aa7c8238d6
  3. 1mo ago Changed · +3 lines · +586 tokens per session 64715afcb4c3
  4. 1mo ago Changed · +94 tokens per session 49a60eee5164
  5. 2mo ago First seen · 126 lines · 4,637 tokens per session scan B 50269cc2826d

Subscribe to this mod's changes

claude-academic-research CLAUDE.md is an instructions file published in the GitHub repository mronkko/claude-academic-research (29 stars, last pushed yesterday), licensed MIT. It adds 7,512 tokens to every session, about $0.0300 per session on Opus 5.5. A static security scan graded it B with 2 findings (reads agent configuration directories, makes network calls). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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