Scientific instructions files

515 tagged Scientific, measured the same way as everything else here.

Browse within: bioinformatics 28model-context-protocol 15machine-learning 13cyanheads 12genomics 11drug-discovery 9Cheminformatics 7academic-writing 7LaTeX 6claude-plugin 6ai-research 5astronomy 5calculator 5chemistry 5

statfin-mcp CLAUDE.md

145

markusl/statfin-mcp

Instructions file

Instructions for markusl/statfin-mcp, covering statfin mcp server, quick reference, development commands, project structure and mcp tools.

not rated 11 2mo ago A 802 tokens original MIT

agentxp CLAUDE.md

147

ai-analyst-lab/agentxp

Instructions file

Instructions for ai-analyst-lab/agentxp, covering claude.md — agentxp, 1. identity, 2. skills registry, 3. specialists and 4. the worldview.

not rated 11 7d ago A 3,971 tokens original Apache-2.0

dengxu11111/dual-ai-paper-coach

Instructions file

Instructions for dengxu11111/dual-ai-paper-coach, covering claude.md — your working rules in this project, project goal, architecture (v0.3), your role and priorities.

not rated 11 3mo ago A 1,975 tokens original MIT

SpatialClaw AGENTS.md

151

ShangBioLab/SpatialClaw

Instructions file CodexOpenCode

Instructions for ShangBioLab/SpatialClaw, covering agents.md — spatialclaw guide for ai coding agents, project overview, setup, commands and project structure.

not rated 11 3mo ago A 1,687 tokens original Apache-2.0

maweiruc/stat-toolkits-eif

Instructions file CodexOpenCode

Instructions for maweiruc/stat-toolkits-eif, covering agent instructions for the eif toolkit, first files to read, default workflow, latex inbox behavior and research problems.

not rated 12 3mo ago A 1,072 tokens original MIT

scraps AGENTS.md

153

rnabioco/scraps

Instructions file CodexOpenCode

Instructions for rnabioco/scraps, covering agents.md - developer guide for scraps, quick start commands, running the pipeline, run pipeline with test data and run with specific number of cores.

not rated 11 1mo ago A 2,066 tokens original MIT

MathGloss AGENTS.md

154

MathGloss/MathGloss

Instructions file CodexOpenCode

Instructions for MathGloss/MathGloss, covering mathgloss agents, quick reference, agent hand-offs and typical flow, detailed notes per agent and termlist ingestors.

not rated 11 9mo ago A 2,222 tokens original MIT

lambs AGENTS.md

155

dcroote/lambs

Instructions file CodexOpenCode

Instructions for dcroote/lambs, covering lambs — guide for ai agents, using lambs (analysis agents), how to run analysis, input contract and json report schema (reportversion: 1).

not rated 11 1mo ago A 1,793 tokens original Apache-2.0

dginev/latexml-oxide

Instructions file

Claude Code instructions for dginev/latexml-oxide, covering claude.md, active priorities: faithful parity + beyond-perl arxiv runs, project overview, workspace structure and internal documentation.

not rated 11 today A 5,369 tokens original CC0-1.0

comsol-mcp AGENTS.md

157

Ching-Chiang/comsol-mcp

Instructions file CodexOpenCode

Instructions for Ching-Chiang/comsol-mcp, covering agents.md — comsol-server-mcp, project overview, architecture, build and run and module dependency graph.

not rated 11 3mo ago A 1,126 tokens original MIT

ezhou89/medical-research-mcp-suite

Instructions file

Instructions for ezhou89/medical-research-mcp-suite, covering project overview, quick reference, install dependencies, build typescript and run mcp server (for claude desktop integration).

not rated 11 7mo ago A 2,349 tokens original MIT

Mapika/nice-figures

Instructions file CodexOpenCode

Instructions for Mapika/nice-figures, covering nice-figures — instructions for ai agents, get the style helper, or copy the single file (matplotlib + numpy only), workflow and hard rules of the register.

not rated 10 2mo ago A 837 tokens original MIT

symkit-mcp AGENTS.md

160

LBurny/symkit-mcp

Instructions file CodexOpenCode

Instructions for LBurny/symkit-mcp, covering agents.md, repository purpose, major directories, build / test / lint commands and architecture boundaries (ddd).

not rated 10 1mo ago A 1,728 tokens original Apache-2.0

s1ddh-rth/HumanoidClimb-RL

Instructions file

Instructions for s1ddh-rth/HumanoidClimb-RL, covering claude.md, environment setup, common commands, architecture and data flow.

not rated 10 4mo ago A 3,185 tokens original MIT

shukwong/gnomad-mcp-server

Instructions file

Claude Code instructions for shukwong/gnomad-mcp-server, covering claude.md, project overview, development commands, architecture and key considerations.

not rated 10 1y ago A 202 tokens

MaxwellLink AGENTS.md

163

TaoELi/MaxwellLink

Instructions file CodexOpenCode

AGENTS.md instructions for TaoELi/MaxwellLink, covering guidelines for using maxwelllink, preparing input files, performing simulations: general guidelines, performing simulations: hpc systems and postprocessing.

not rated 10 yesterday A 749 tokens GPL-2.0

zfy465914233/scholar-agent

Instructions file GitHub Copilot

Instructions for zfy465914233/scholar-agent, covering global instructions, project context, core constraints, output principles and evidence handling.

not rated 9 1mo ago A 528 tokens original MIT

reaper CLAUDE.md

165

SebastianElvis/reaper

Instructions file

Instructions for SebastianElvis/reaper, covering reaper, project structure, commands, run tests (includes l1 structural eval graders) and run the layered evals.

not rated 9 4mo ago A 1,877 tokens original Apache-2.0

jurimaxam-dotcom/chemdraw-mcp

Instructions file

Instructions for jurimaxam-dotcom/chemdraw-mcp, covering chemdraw-mcp, build / run, auto-gate (the project's green/red), the five tool areas (where a new tool goes) and architecture.

not rated 9 20d ago A 3,342 tokens original Apache-2.0

quattro/jax-numerics-agent

Instructions file CodexOpenCode

Instructions for quattro/jax-numerics-agent, covering agents.md, scope, source of truth, agent workflow and global install note.

not rated 9 22d ago A 262 tokens original MIT