aws-healthomics

aws-healthomics is an MCP server for Claude Code, Codex, Cursor, Gemini CLI, OpenCode from aws-samples/sample-healthomics-agentic-setup. Its token cost is not measured, scanned A, original, MIT-0.

A local MCP server for AWS HealthOmics, an AWS service for storing and processing genomic and other life-science data. It runs from an AWS-provided Python package and requires two environment variables.

In plain words
What is it for?
Use it when setting up an agent or local tool integration that needs to connect to AWS HealthOmics.
Why use it?
It provides a configured connection point for an agent to work with HealthOmics, though the available description does not specify its individual operations.

MCP server for Claude CodeCodexCursorGemini CLIOpenCode ✓ vendor

Written for no agent in particular: it speaks MCP, so any client can run it. Also seen: listed in a Claude config.

Good fit Use it when setting up an agent or local tool integration that needs to connect to AWS HealthOmics.

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Install with agentmods
npx agentmods add mcp/aws-samples/sample-healthomics-agentic-setup/aws-healthomics
About the project

sample-healthomics-agentic-setup is a set of configurations and guidance for connecting coding assistants to the AWS HealthOmics MCP Server. It helps users install the appropriate agent, steering documents, skills, and MCP setup for tools such as Kiro, Claude Code, Cursor, Codex, and Gemini CLI. The catalogue entries package parts of this HealthOmics workflow.

aws-samples/sample-healthomics-agentic-setup · 4 stars · on GitHub

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Clone the repo
git clone --depth 1 https://github.com/aws-samples/sample-healthomics-agentic-setup

Made for: Claude Code, Codex, Cursor, Gemini CLI, OpenCode.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for aws-healthomics

README.md
[![agentmods](https://agentmods.dev/badge/mcp/aws-samples/sample-healthomics-agentic-setup/aws-healthomics/github.svg)](https://agentmods.dev/mcp/aws-samples/sample-healthomics-agentic-setup/aws-healthomics)
Your own site
<a href="https://agentmods.dev/mcp/aws-samples/sample-healthomics-agentic-setup/aws-healthomics"><img src="https://agentmods.dev/badge/mcp/aws-samples/sample-healthomics-agentic-setup/aws-healthomics/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for aws-healthomics

Your own site · 80×15
<a href="https://agentmods.dev/mcp/aws-samples/sample-healthomics-agentic-setup/aws-healthomics"><img src="https://agentmods.dev/badge/mcp/aws-samples/sample-healthomics-agentic-setup/aws-healthomics.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session not measured What this adds to a session before it is invoked.
When invoked not measured Not applicable: nothing here is loaded into a session.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Security

Grade A, and why

aws-healthomics scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

claude-code/.mcp.json · 12 lines

The source is not reproduced here

Licensed MIT-0

The repository is licensed MIT-0, which this catalogue does not treat as permission to reproduce the file. Read it at the source.

Read it on GitHub

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 9d ago First seen · 12 lines scan A 8be70d6b59e2

Subscribe to this mod's changes

aws-healthomics is an MCP server published in the GitHub repository aws-samples/sample-healthomics-agentic-setup (4 stars, last pushed 8d ago), licensed MIT-0. Its token cost is not measured: an MCP server costs its tool schemas, not its config file. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.