allotrope-mcp-server

allotrope-mcp-server is an MCP server for Claude Code, Codex, Cursor, Gemini CLI, OpenCode from aws-samples/sample-laboratory-data-transformation-mcp. Its token cost is not measured, scanned A, original, MIT-0.

A local MCP server for transforming laboratory data with the Allotrope format. MCP is a standard way for an AI assistant to connect to external tools.

In plain words
What is it for?
Use it when running the sample laboratory data transformation workflow locally through MCP.
Why use it?
It provides the configured laboratory-data transformation service to an MCP-compatible assistant.

MCP server for Claude CodeCodexCursorGemini CLIOpenCode ✓ vendor

Written for no agent in particular: it speaks MCP, so any client can run it.

Good fit Use it when running the sample laboratory data transformation workflow locally through MCP.

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Install with agentmods
npx agentmods add mcp/aws-samples/sample-laboratory-data-transformation-mcp/allotrope-mcp-server
About the project

Allotrope MCP Server is a Model Context Protocol server for inspecting, downloading, and validating laboratory instrument data represented in Allotrope Simple Model JSON formats. It is for AI assistants and scientific data workflows that need to work with standardized laboratory records, and the catalogue includes it as an MCP server with a related skill.

aws-samples/sample-laboratory-data-transformation-mcp · 4 stars · on GitHub

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Clone the repo
git clone --depth 1 https://github.com/aws-samples/sample-laboratory-data-transformation-mcp

Made for: Claude Code, Codex, Cursor, Gemini CLI, OpenCode.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for allotrope-mcp-server

README.md
[![agentmods](https://agentmods.dev/badge/mcp/aws-samples/sample-laboratory-data-transformation-mcp/allotrope-mcp-server/github.svg)](https://agentmods.dev/mcp/aws-samples/sample-laboratory-data-transformation-mcp/allotrope-mcp-server)
Your own site
<a href="https://agentmods.dev/mcp/aws-samples/sample-laboratory-data-transformation-mcp/allotrope-mcp-server"><img src="https://agentmods.dev/badge/mcp/aws-samples/sample-laboratory-data-transformation-mcp/allotrope-mcp-server/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for allotrope-mcp-server

Your own site · 80×15
<a href="https://agentmods.dev/mcp/aws-samples/sample-laboratory-data-transformation-mcp/allotrope-mcp-server"><img src="https://agentmods.dev/badge/mcp/aws-samples/sample-laboratory-data-transformation-mcp/allotrope-mcp-server.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session not measured What this adds to a session before it is invoked.
When invoked not measured Not applicable: nothing here is loaded into a session.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Security

Grade A, and why

allotrope-mcp-server scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

listed in the official MCP registry · 8 lines

The source is not reproduced here

Licensed MIT-0

The repository is licensed MIT-0, which this catalogue does not treat as permission to reproduce the file. Read it at the source.

Read it on GitHub

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 9d ago First seen · 8 lines scan A 9846bf97efd8

Subscribe to this mod's changes

allotrope-mcp-server is an MCP server published in the GitHub repository aws-samples/sample-laboratory-data-transformation-mcp (4 stars, last pushed 2mo ago), licensed MIT-0. Its token cost is not measured: an MCP server costs its tool schemas, not its config file. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.