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biocontext_kb

biocontext_kb is an MCP server for Claude Code, Codex, Cursor, Gemini CLI, OpenCode from fastmcp-me/knowledgebase-mcp. Its token cost is not measured, scanned A, original, from a forked repository, Apache-2.0.

A biomedical research knowledge base exposed as an MCP server. Biomedical research studies living systems, health, and disease, and a knowledge base stores information that can be searched or used for answers.

In plain words
What is it for?
Biomedical research tasks supported by the biocontext_kb Python package.
Why use it?
It gives an agent access to information from the BioContextAI project instead of relying only on its built-in knowledge.

MCP server for Claude CodeCodexCursorGemini CLIOpenCode

Written for no agent in particular: it speaks MCP, so any client can run it.

not rated 0repo 9mo ago A scan tokens not measured fork Apache-2.0

Good fit Biomedical research tasks supported by the biocontext_kb Python package.

Compare 6 mcp servers from other repositories ↓
Install with agentmods
npx agentmods add mcp/fastmcp-me/knowledgebase-mcp/biocontext_kb
View source ↗ fastmcp-me/knowledgebase-mcp biocontext.ai
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Clone the repo
git clone --depth 1 https://github.com/fastmcp-me/knowledgebase-mcp

Made for: Claude Code, Codex, Cursor, Gemini CLI, OpenCode.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for biocontext_kb

README.md
[![agentmods](https://agentmods.dev/badge/mcp/fastmcp-me/knowledgebase-mcp/biocontext_kb/github.svg)](https://agentmods.dev/mcp/fastmcp-me/knowledgebase-mcp/biocontext_kb)
Your own site
<a href="https://agentmods.dev/mcp/fastmcp-me/knowledgebase-mcp/biocontext_kb"><img src="https://agentmods.dev/badge/mcp/fastmcp-me/knowledgebase-mcp/biocontext_kb/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for biocontext_kb

Your own site · 80×15
<a href="https://agentmods.dev/mcp/fastmcp-me/knowledgebase-mcp/biocontext_kb"><img src="https://agentmods.dev/badge/mcp/fastmcp-me/knowledgebase-mcp/biocontext_kb.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session not measured What this adds to a session before it is invoked.
When invoked not measured Not applicable: nothing here is loaded into a session.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin fork From a forked repository.
Security

Grade A, and why

biocontext_kb scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

listed in the official MCP registry · 8 lines

What it actually says

{ "biocontext_kb": { "command": "uvx", "args": [ "biocontext_kb" ] } }

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2mo ago First seen · 8 lines scan A fa973af591eb

Subscribe to this mod's changes

biocontext_kb is an MCP server published in the GitHub repository fastmcp-me/knowledgebase-mcp (0 stars, last pushed 9mo ago), licensed Apache-2.0. Its token cost is not measured: an MCP server costs its tool schemas, not its config file. A static security scan graded it A with 0 findings. It comes from a forked repository.

ResearchScientific
Related

biocontext_kb compared with mcp servers from other repositories

biocontext_kb next to 6 mcp servers from other repositories
ModTypeStarsLast pushLicenceScanTokensWorks with
biocontext_kbfastmcp-me/knowledgebase-mcpMCP server09mo agoApache-2.0A—Claude Code, Codex, Cursor, Gemini CLI, OpenCode
health-system-profilerajhcs/healthcare-data-mcpMCP server91mo agoMITA—Claude Code, Codex, Cursor, Gemini CLI, OpenCode
clinical-trials-ai-mcpCSOAI-ORG/clinical-trials-ai-mcpMCP server01mo agoMITA—Claude Code, Codex, Cursor, Gemini CLI, OpenCode
outdooriq-mcpbch1212/outdooriq-mcpMCP server01mo agoMITA—Claude Code, Codex, Cursor, Gemini CLI, OpenCode
mcp-airqCorantGmbH/mcp-airqMCP server03mo agoApache-2.0A—Claude Code, Codex, Cursor, Gemini CLI, OpenCode
mcp-sympydaedalus/mcp-sympyMCP server06mo agoMITA—Claude Code, Codex, Cursor, Gemini CLI, OpenCode
weather-mcp-agentShivbaj/MCPMCP server01y agoMITA—Claude Code, Codex, Cursor, Gemini CLI, OpenCode