Getting it into your agent
There is no command for this one: it runs only inside a plugin, and the catalogue could not identify which plugin ships it. The source is linked below.
Wrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/mcp/jasonkim8652/protein-design-mcp/protein-design)<a href="https://agentmods.dev/mcp/jasonkim8652/protein-design-mcp/protein-design"><img src="https://agentmods.dev/badge/mcp/jasonkim8652/protein-design-mcp/protein-design/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/mcp/jasonkim8652/protein-design-mcp/protein-design"><img src="https://agentmods.dev/badge/mcp/jasonkim8652/protein-design-mcp/protein-design.svg" alt="Reviewed on agentmods" width="80" height="20"></a>Grade A, and why
protein-design scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
Copies of this mod
1 near-identical copy found in the catalogue:
- protein-design — 100% identical, 0 lines differ
What it actually says
{
"protein-design": {
"type": "stdio",
"command": "docker",
"args": [
"run",
"-i",
"--rm",
"--network",
"host",
"--gpus",
"device=7",
"-e",
"SKIP_MODEL_DOWNLOAD=true",
"-v",
"/home/jk661/projects/protein-design-mcp/models:/models",
"-v",
"/home/jk661/projects/protein-design-mcp/data:/data",
"protein-design-mcp:local"
]
}
}What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 12d ago First seen · 22 lines scan A 2a26b9e544fd
protein-design is an MCP server published in the GitHub repository jasonkim8652/protein-design-mcp (16 stars, last pushed 4mo ago), licensed Apache-2.0. Its token cost is not measured: an MCP server costs its tool schemas, not its config file. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
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