agentmods.dev

gwas-bioinformatics

gwas-bioinformatics is an MCP server for Claude Code, Codex, Cursor, Gemini CLI, OpenCode from muslus/gwas-mcp. Its token cost is not measured, scanned A, original, MIT.

A local research server for genome-wide association studies (GWAS), which examine links between genetic differences and traits or diseases. It runs as a Python module and needs a configured environment path.

In plain words
What is it for?
For developers connecting an AI assistant to a local GWAS bioinformatics service. The input does not provide enough detail to name its concrete commands.
Why use it?
It gives an AI assistant a configured way to work with GWAS-related tasks, but the supplied details do not say which specific operations it supports.

MCP server for Claude CodeCodexCursorGemini CLIOpenCode

Written for no agent in particular: it speaks MCP, so any client can run it. Also seen: listed in a Claude config.

not rated 1repo 9mo ago A scan tokens not measured original MIT

Good fit For developers connecting an AI assistant to a local GWAS bioinformatics service. The input does not provide enough detail to name its concrete commands.

Compare 6 mcp servers from other repositories ↓
Install with agentmods
npx agentmods add mcp/muslus/gwas-mcp/gwas-bioinformatics

Installing this writes the configuration, not the program: `python` runs a file from the repository, so clone it first and make the path in the command match where you put it.

View source ↗ muslus/gwas-mcp
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Clone the repo
git clone --depth 1 https://github.com/muslus/gwas-mcp

Installing this writes the configuration, not the program: `python` runs a file from the repository, so clone it first and make the path in the command match where you put it.

Made for: Claude Code, Codex, Cursor, Gemini CLI, OpenCode.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for gwas-bioinformatics

README.md
[![agentmods](https://agentmods.dev/badge/mcp/muslus/gwas-mcp/gwas-bioinformatics/github.svg)](https://agentmods.dev/mcp/muslus/gwas-mcp/gwas-bioinformatics)
Your own site
<a href="https://agentmods.dev/mcp/muslus/gwas-mcp/gwas-bioinformatics"><img src="https://agentmods.dev/badge/mcp/muslus/gwas-mcp/gwas-bioinformatics/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for gwas-bioinformatics

Your own site · 80×15
<a href="https://agentmods.dev/mcp/muslus/gwas-mcp/gwas-bioinformatics"><img src="https://agentmods.dev/badge/mcp/muslus/gwas-mcp/gwas-bioinformatics.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session not measured What this adds to a session before it is invoked.
When invoked not measured Not applicable: nothing here is loaded into a session.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Security

Grade A, and why

gwas-bioinformatics scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

config/claude_desktop_config.json · 13 lines

What it actually says

{
  "gwas-bioinformatics": {
    "command": "python",
    "args": [
      "-m",
      "gwas_mcp.server"
    ],
    "cwd": "I:/ZZZ_Projects/GWAS-MCP/src",
    "env": {
      "PYTHONPATH": "I:/ZZZ_Projects/GWAS-MCP/src"
    }
  }
}
Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2mo ago First seen · 13 lines scan A 89d4854f9436

Subscribe to this mod's changes

gwas-bioinformatics is an MCP server published in the GitHub repository muslus/gwas-mcp (1 stars, last pushed 9mo ago), licensed MIT. Its token cost is not measured: an MCP server costs its tool schemas, not its config file. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

ResearchScientific
Related

gwas-bioinformatics compared with mcp servers from other repositories

gwas-bioinformatics next to 6 mcp servers from other repositories
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gwas-bioinformaticsmuslus/gwas-mcpMCP server19mo agoMITA—Claude Code, Codex, Cursor, Gemini CLI, OpenCode
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