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wjgoarxiv/vmd-hydrate-mcp

An MCP server that drives VMD for GROMACS/LAMMPS trajectory analysis + clathrate-hydrate cage science (requires a local VMD install)

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vmd-hydrate-mcp

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wjgoarxiv/vmd-hydrate-mcp

MCP server Claude CodeCodexCursor +2

An MCP server that drives VMD for GROMACS/LAMMPS trajectory analysis, scripted rendering, and clathrate-hydrate cage science (H-bond networks, F3/F4 order parameters). Runs locally from the vmd-hydrate-mcp Python package.

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