It lets a coding agent start these modeling workflows from the command line instead of requiring separate manual steps.

boltz-gemini-cli — Plugin for Gemini CLI by boltz-bio/boltz-api-skills

boltz-gemini-cli

boltz-gemini-cli is a plugin for Gemini CLI from boltz-bio/boltz-api-skills. Its token cost is not measured, scanned A, original, MIT.

A Gemini CLI add-on for running Boltz biomolecular modeling workflows. Boltz is software used to model molecules and biological structures.

In plain words

What is it for?: Use it to run Boltz workflows while working in Gemini CLI on biomolecular modeling tasks.
Why use it?: It lets a coding agent start these modeling workflows from the command line instead of requiring separate manual steps.

Written for Gemini CLI: a Gemini CLI extension manifest. Also seen: mentions Gemini CLI.

Good fit Use it to run Boltz workflows while working in Gemini CLI on biomolecular modeling tasks.

Compare 6 plugins from other repositories ↓

Install with agentmods

npx agentmods add plugins/boltz-bio/boltz-api-skills/gemini-cli

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Clone the repo

git clone --depth 1 https://github.com/boltz-bio/boltz-api-skills

Made for: Gemini CLI.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

README.md

[![agentmods](https://agentmods.dev/badge/plugins/boltz-bio/boltz-api-skills/gemini-cli/github.svg)](https://agentmods.dev/plugins/boltz-bio/boltz-api-skills/gemini-cli)

Your own site

<a href="https://agentmods.dev/plugins/boltz-bio/boltz-api-skills/gemini-cli"><img src="https://agentmods.dev/badge/plugins/boltz-bio/boltz-api-skills/gemini-cli/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

Your own site · 80×15

<a href="https://agentmods.dev/plugins/boltz-bio/boltz-api-skills/gemini-cli"><img src="https://agentmods.dev/badge/plugins/boltz-bio/boltz-api-skills/gemini-cli.svg" alt="Reviewed on agentmods" width="80" height="20"></a>

Per session not measured What this adds to a session before it is invoked.

When invoked not measured Not applicable: nothing here is loaded into a session.

Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.

Origin original No closer match found in the catalogue.

Security

Grade A, and why

boltz-gemini-cli scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

surfaces/gemini-cli/gemini-extension.json · 7 lines

What it actually says

{
  "name": "boltz-gemini-cli",
  "version": "0.1.0",
  "description": "Run Boltz biomolecular modeling workflows from Gemini CLI.",
  "contextFileName": "GEMINI.md"
}

Files

What ships with it

3 files beside gemini-extension.json in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

2mo ago First seen · 7 lines scan A 1a7da8f0f474

Subscribe to this mod's changes

boltz-gemini-cli is a plugin published in the GitHub repository boltz-bio/boltz-api-skills (5 stars, last pushed 18d ago), licensed MIT. Its token cost is not measured: this kind of file is read by the harness, not the model. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-08.

Scientific

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