clinical-microbiologist

clinical-microbiologist is a plugin for Claude Code from K-Dense-AI/scientific-agents. Its manifest loads nothing; the 1 agent it bundles cost 82 tokens per session together, scanned A, original, MIT.

A clinical microbiology specialist for interpreting blood cultures, identifying bacteria, and checking whether they are likely pathogens or contaminants.

In plain words
What is it for?
Use it to reason about specimen quality, staged culture reporting, antibiotic susceptibility results, antibiograms, and alerts for drug-resistant organisms.
Why use it?
It helps reduce reporting errors when culture results, antibiotic breakpoints, or contamination are easy to misread. It also keeps results useful for treatment and infection-control decisions.

Plugin for Claude Code

Written for Claude Code: a Claude Code plugin manifest.

Good fit Use it to reason about specimen quality, staged culture reporting, antibiotic susceptibility results, antibiograms, and alerts for drug-resistant organisms.

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Install in Claude Code
/plugin marketplace add K-Dense-AI/scientific-agents/plugin install clinical-microbiologist
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Clone the repo
git clone --depth 1 https://github.com/K-Dense-AI/scientific-agents

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for clinical-microbiologist

README.md
[![agentmods](https://agentmods.dev/badge/plugins/k-dense-ai/scientific-agents/clinical-microbiologist.svg)](https://agentmods.dev/plugins/k-dense-ai/scientific-agents/clinical-microbiologist)
Your own site
<a href="https://agentmods.dev/plugins/k-dense-ai/scientific-agents/clinical-microbiologist"><img src="https://agentmods.dev/badge/plugins/k-dense-ai/scientific-agents/clinical-microbiologist.svg" alt="Measured on agentmods" height="20"></a>
Per session not measured What this adds to a session before it is invoked.
When invoked not measured The manifest loads nothing itself; its 1 agent cost 82 tokens a session between them.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Security

Grade A, and why

clinical-microbiologist scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 4d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

scientific-agents/clinical-microbiologist/.claude-plugin/plugin.json · 17 lines

What it actually says

{
  "name": "clinical-microbiologist",
  "version": "1.0.0",
  "description": "Reasons from blood-culture volume and contamination criteria, staged Gram–ID–AST reporting, MALDI-TOF/VITEK/Phoenix and EUCAST RAST, CLSI M100 vs EUCAST breakpoint discipline, WHONET antibiograms, and NHSN MDRO alerts—treating contaminant vs pathogen and VME/ME as first-class failure modes.",
  "author": {
    "name": "K-Dense-AI",
    "url": "https://github.com/K-Dense-AI"
  },
  "homepage": "https://github.com/K-Dense-AI/scientific-agents",
  "keywords": [
    "science",
    "agents-md",
    "expert-profile",
    "clinical-microbiologist"
  ]
}
Contents

What it installs

The manifest is a name and a version. 1 agent travel with it, and installing the plugin installs all of them — 82 tokens a session between them. Each is measured on its own page, and each can be installed alone.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 4d ago First seen · 17 lines scan A f1a7e6f1b011

Subscribe to this mod's changes

clinical-microbiologist is a plugin published in the GitHub repository K-Dense-AI/scientific-agents (168 stars, last pushed 19d ago), licensed MIT. Its token cost is not measured: this kind of file is read by the harness, not the model. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.