K-Dense-AI/scientific-agents

Expert-thinking AGENTS.md profiles that teach AI agents to reason like senior scientists and engineers.

168Stars on the repository
200Mods indexed here, across every type
20d agoLast push, which is what freshness is scored on
MITLicence, which decides whether bodies are shown

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 81 tokens together

Treat the neuron as a cable with active channels, not a point integrator unless you have shown it is one for your question. Separate voltage, calcium, and fluorescence observables. GCaMP reports Ca²⁺-driven fluorescence with indicator kinetics; it is not membrane potential. FRET sensors (ArcLight, ASAP) trade speed…

not rated 168 +9 20d ago A tokens not measured original MIT

ceramics-engineer

74

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 86 tokens together

Reasons from crystal chemistry, defect equilibria, sintering densification, and flaw statistics through XRD/Rietveld, dilatometry, SEM fractography, impedance spectroscopy, and Weibull analysis per ASTM C1161/C1239/C1421 while treating surface grinding flaws, Pb/alkali volatilization, closed-pore traps, and…

not rated 168 +9 20d ago A tokens not measured original MIT

chemical-biologist

75

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 81 tokens together

Reasons from chemical genetics, ABPP/TPP/CETSA chemoproteomics, and SGC/Portal probe criteria; deconvolves phenotypic hits with PAINS/aggregator triage, inactive analogs, and genetic epistasis while treating colloidal aggregation, probe promiscuity, and degrader DC50/Dmax tag artifacts as first-class failure modes.

not rated 168 +9 20d ago A tokens not measured original MIT

chemical-engineer

76

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 97 tokens together

Reasons from closing mass, energy, and momentum balances and competing equilibrium/kinetics/transport regimes through Aspen Plus/HYSYS flowsheeting, McCabe-Thiele and Damkohler-based sizing, pinch analysis, and HAZOP/LOPA with API 520/521 relief, while treating azeotrope-pinched columns, reactor runaway, recycle…

not rated 168 +9 20d ago A tokens not measured original MIT

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 115 tokens together

Reasons from seawater thermodynamics, carbonate-system coupling (DIC, TA, pH, pCO2), redox hierarchies, and tracer conservation on density surfaces through CO2SYS/seacarb with Dickson CRMs, Winkler oxygen, IRMS isotopes, GO-FLO clean trace-metal sampling, and GLODAP/SOCAT/GEOTRACES synthesis while treating organic…

not rated 168 +9 20d ago A tokens not measured original MIT

cheminformatician

78

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 70 tokens together

Reasons from Standard InChI identity and RDKit sanitization through ChEMBL pChEMBL harmonization, Morgan/ECFP fingerprints, scaffold splits and applicability domains, while treating tautomer collapse, KNIME-vs-Python canonicalization drift, and random-split QSAR leakage as first-class failure modes.

not rated 168 +9 20d ago A tokens not measured original MIT

chromatin-biologist

79

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 53 tokens together

Reasons from nucleosome arrays, histone PTM crosstalk, remodelers, and 3D genome organization; validates ChIP/CUT&Tag/ATAC with spike-ins and IgG controls while separating composition from mechanism.

not rated 168 +9 20d ago A tokens not measured original MIT

chronobiologist

80

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 82 tokens together

Reasons from TTFL molecular clocks, SCN–peripheral coupling, and zeitgeber entrainment (PRC); analyzes actigraphy, DLMO, and PER2::LUC with ClockLab/LumiCycle, MetaCycle/eJTK/LimoRhyde, and CircaDB/CGDB/ChronobioticsDB while separating masking from endogenous τ under constant routine/FD.

not rated 168 +9 20d ago A tokens not measured original MIT

civil-engineer

81

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 83 tokens together

Reasons from load paths, factored load combinations, soil-structure interaction, and governing limit states through ASCE 7, ACI 318, AISC 360, and tools like SAP2000/ETABS, PLAXIS, and HEC-RAS while treating missing load paths, connection and foundation failures, differential settlement, and unvalidated FEA as…

not rated 168 +9 20d ago A tokens not measured original MIT

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 94 tokens together

Reasons from TCFD/IFRS S2 four-pillar disclosure, NGFS Phase V orderly/disorderly/hot-house scenarios, hazard–exposure–vulnerability and RMS/AIR/CLIMADA cat economics, transition carbon-price and stranded-asset pathways, and PCAF financed emissions while treating exposure geocoding quality, Kotz damage-function…

not rated 168 +9 20d ago A tokens not measured original MIT

climate-scientist

83

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 112 tokens together

Reasons from ERF/EEI energy-budget closure, AR6 forcing (WMGHG vs ERFaci), optimal fingerprinting and FAR event attribution, CMIP6/ScenarioMIP SSP workflows (ESGF, ESMValTool), and paleo proxy physics (PAGES2k, ice-core δD/CO₂, foraminifera Mg/Ca, coral Sr/Ca) while treating aerosol uncertainty, tree-ring divergence…

not rated 168 +9 20d ago A tokens not measured original MIT

climatologist

84

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 105 tokens together

Characterizes climate via WMO CLINO baselines (1991–2020 vs 1961–1990), ETCCDI indices, and teleconnection modes; bridges ERA5 climatology to CMIP6/ScenarioMIP SSP deltas (xsdba/QDM), optimal-fingerprint attribution, AR6 ERF/ECS/TCR, and proxy reconstructions (CPS/EIV, PAGES2k, MXD divergence)—distinct from weather…

not rated 168 +9 20d ago A tokens not measured original MIT

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 92 tokens together

Reasons from ALCOA+ data integrity, traceability, and analysis-ready datasets through CDASH/SDTM/ADaM pipelines, edit-check specs, Pinnacle 21 validation, MedDRA/WHO Drug coding, and define.xml under 21 CFR Part 11, treating blinding breaches, SAE-safety reconciliation gaps, mid-study IG/dictionary version drift, and…

not rated 168 +9 20d ago A tokens not measured original MIT

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 105 tokens together

Reasons from gamete and embryo biology, manufacturing-quality lab control, and prespecified cycle/oocyte/embryo denominators through Vienna consensus KPIs, Gardner/ASEBIR grading, time-lapse morphokinetics, WHO 6th-edition andrology, and vitrification SOPs while treating media-lot and incubator-gas drift, witness…

not rated 168 +9 20d ago A tokens not measured original MIT

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 42 tokens together

Clinical epidemiology expert for causal study design, observational bias control, GRADE/EBM synthesis, and principled reporting (CONSORT/STROBE/PRISMA).

not rated 168 +9 20d ago A tokens not measured original MIT

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 88 tokens together

Reasons from pre-analytical–analytical–post-analytical total testing process; EP15/EP09/EP28 validation, Westgard/Sigma IQC, HIL indices (C56), EP23/IQCP, critical-value read-back, type-and-screen/crossmatch, CLSI M100 direct AST, LC-MS/MS C62, and AUTO10 autoverification.

not rated 168 +9 20d ago A tokens not measured original MIT

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 82 tokens together

Reasons from blood-culture volume and contamination criteria, staged Gram–ID–AST reporting, MALDI-TOF/VITEK/Phoenix and EUCAST RAST, CLSI M100 vs EUCAST breakpoint discipline, WHONET antibiograms, and NHSN MDRO alerts—treating contaminant vs pathogen and VME/ME as first-class failure modes.

not rated 168 +9 20d ago A tokens not measured original MIT

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 55 tokens together

Reasons from exposure–response, popPK (NONMEM), DDI (ICH M12), TDM/NTI windows, and renal/hepatic/allometric adjustment; aligns dose finding with ICH E4 and FDA clinical pharmacology labeling.

not rated 168 +9 20d ago A tokens not measured original MIT

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 41 tokens together

Reasons from protocol SAPs, ICH-GCP, randomization/blinding, and CDISC SDTM while treating protocol deviations and immortal time as first-class failure modes.

not rated 168 +9 20d ago A tokens not measured original MIT

coastal-engineer

92

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 85 tokens together

Reasons from joint-probability surge and waves through CEM/EurOtop runup-overtopping, Van der Meer/Rock Manual armor, CERC–Van Rijn sediment budgets, and CMS/XBeach/ADCIRC–SWAN model selection while treating toe scour, armor breakage, datum mismatch (BFE vs MHHW), and downdrift impacts as first-class failure modes.

not rated 168 +9 20d ago A tokens not measured original MIT

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 82 tokens together

Reasons from latent constructs through converging behavior, fMRI/M/EEG, TMS, and lesion evidence; designs factorial and dissociation contrasts, fMRIPrep/GLMsingle/MNE pipelines, MVPA/RSA, and COBIDAS reporting while treating pure insertion, reverse inference, motion confounds, and in-sample decoding as first-class…

not rated 168 +9 20d ago A tokens not measured original MIT

cognitive-scientist

94

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 79 tokens together

Reasons from Marr's levels of analysis, latent processes behind RT and accuracy, and strong inference through PsychoPy paradigms, signal-detection d-prime/criterion, sequential-sampling and ACT-R models, and crossed mixed-effects designs while treating speed-accuracy tradeoffs, criterion shifts, item confounds, and…

not rated 168 +9 20d ago A tokens not measured original MIT

colloid-chemist

95

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 94 tokens together

Reasons from interfacial thermodynamics, DLVO and non-DLVO forces, zeta-potential, and rheology through orthogonal characterization (DLS, NTA, cryo-TEM, SAXS/SANS S(Q), pendant-drop tensiometry) and accelerated-aging stability tests while treating coalescence, Ostwald ripening, creaming, and flocculation crossing the…

not rated 168 +9 20d ago A tokens not measured original MIT

combinatorialist

96

K-Dense-AI/scientific-agents

Plugin Claude Code

Bundles 1 agent · 96 tokens together

Reasons from labelled vs unlabelled enumeration, EGF/OGF and species, bijective and probabilistic proofs, Turán/Ramsey/extremal bounds, and BIBD/OA design parameters through SageMath/GAP/nauty, OEIS, House of Graphs, and Colbourn–Dinitz tables while treating isomorphism double-counting, parity barriers, and OEIS false.

not rated 168 +9 20d ago A tokens not measured original MIT

At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: