2,315 projects whose own agent configuration covers research. These are not mods to install — they are how the maintainers of these repositories tell an agent what to do, and what to avoid.
All projects Building agents8,442Claude Code6,875Data and AI3,584Git and workflow3,574Backend and APIs3,550Languages3,468Planning3,315Code review2,876Testing2,653DevOps and cloud2,462Writing and docs2,461Memory and context2,373
Any agent Claude CodeCodexOpenCodeGitHub CopilotGemini CLICursorWindsurfKiro
| Project | Stars | Configures | Files | Always loaded |
|---|---|---|---|---|
| team-reflect/reflect-open Open-source Reflect rewrite: A local-first AI agent-friendly Markdown note-taking app | 1,610 | Claude Code, Codex, OpenCode | 4 | 3,779 tok |
| jsmastery-pro/skills jsmastery.com Agentic Development skills behind the JS Mastery workflow | 1,602 | Claude Code | 3 | 582 tok |
| mark3labs/mcphost A CLI host application that enables Large Language Models (LLMs) to interact with external | 1,591 | Codex, OpenCode | 2 | 380 tok |
| nickclyde/duckduckgo-mcp-server A Model Context Protocol (MCP) server that provides web search capabilities through DuckDu | 1,568 | Claude Code | 1 | 1,548 tok |
| disler/claude-code-hooks-multi-agent-observability Real-time monitoring for Claude Code agents through simple hook event tracking. | 1,567 | Claude Code, Codex, Gemini CLI, OpenCode | 40 | 88 tok |
| PaperDebugger/paperdebugger paperdebugger.com A Plugin-Based Multi-Agent System for In-Editor Academic Writing, Review, and Editing | 1,554 | Claude Code | 1 | — |
| mattzh72/articraft Reference code for the articraft paper. | 1,539 | Claude Code, Codex, OpenCode | 2 | 2,783 tok |
| nvk/llm-wiki llm-wiki.net LLM-compiled knowledge bases for any AI agent. Parallel multi-agent research, thesis-drive | 1,510 | Claude Code, Codex, OpenCode | 2 | 16,357 tok |
| limecloud/lime limeai.run Full-stack AI agent for coding, files, terminals, tools, research, content, multimodal wor | 1,493 | Claude Code, Codex, OpenCode | 2 | 3,577 tok |
| jellydn/zed-101-setup itman.fyi Your ultimate guide to setting up Zed with Vim mode, tailored settings, and key bindings f | 1,464 | Codex, OpenCode | 1 | 584 tok |
| bramses/chatgpt-md A (nearly) seamless integration of ChatGPT into Obsidian. | 1,456 | Claude Code, Codex, OpenCode | 2 | 2,190 tok |
| remorses/kimaki kimaki.dev all opencode features deeply integrated inside Discord. each project is a channel. each se | 1,446 | Codex, OpenCode | 1 | 9,729 tok |
| winedarksea/AutoTS Automated Time Series Forecasting | 1,434 | Codex, OpenCode | 1 | 846 tok |
| K-Dense-AI/k-dense-byok arxiv.org An AI co-scientist running on your desktop. Claude Science but better. | 1,427 | Codex, OpenCode | 1 | 19,736 tok |
| regenrek/deepwiki-mcp 📖 MCP server for fetch deepwiki.com and get latest knowledge in Cursor and other Code Edi | 1,389 | Cursor | 2 | 70 tok |
| Dimillian/CodexSkillManager macOS app to manage your Codex skills | 1,379 | Codex, OpenCode | 1 | 880 tok |
| OpenRaiser/NanoResearch 🦞+🔬 NanoResearch: The Autonomous AI Research Assistant | 1,332 | Claude Code, Codex, OpenCode | 2 | 1,586 tok |
| 917Dhj/DeepPaperNote 917dhj.github.io DeepPaperNote is an agent skill for deep-reading a single paper and generating high-qualit | 1,304 | Claude Code, Codex, OpenCode | 2 | 986 tok |
| handsome-rich/Awesome-Auto-Research-Tools A curated collection of automated research tools, covering literature search, paper readin | 1,275 | Claude Code | 1 | 75 tok |
| liliu-z/stashbase stashbase.ai An open-source, local-first writing workspace where you can write with Claude Code and Cod | 1,273 | Claude Code, Codex, OpenCode | 2 | 3,038 tok |
| frank890417/taiwan-md taiwan.md 🇹🇼 Let the whole world fully understand Taiwan | An open-source, AI-friendly knowledge b | 1,237 | Claude Code, Codex | 47 | 4,924 tok |
| xyTom/coding-tools-mcp coding-tools-mcp.github.io Give any AI agent the ability to code | 1,222 | Codex, OpenCode | 1 | 329 tok |
| nspady/google-calendar-mcp MCP integration for Google Calendar to manage events. | 1,211 | Claude Code, Codex, OpenCode | 10 | 2,636 tok |
| Rimagination/scansci-pdf | 1,202 | Codex, OpenCode | 1 | 588 tok |
| rdi-berkeley/agents-last-exam agents-last-exam.org Agents' Last Exam | 1,154 | Codex, OpenCode | 1 | 1,547 tok |
| duanyytop/agents-radar duanyytop.github.io Daily AI ecosystem digest from 10 sources (GitHub, ArXiv, HN, HuggingFace, Product Hunt, D | 1,152 | Claude Code, Codex, OpenCode | 2 | 7,079 tok |
| poco-ai/Agentero agentero.app An Agent-friendly way to manage literature. | 1,137 | Claude Code, Codex, OpenCode | 6 | 2,038 tok |
| Kc1t/alethe-agents alethe-agents.kc1t.com A local-first desktop workspace for running, organizing, and resuming multiple coding age | 1,122 | Claude Code, Codex, OpenCode | 3 | 4,236 tok |
| liangdabiao/amazon-sorftime-research-MCP-skill agents.liangdabiao.com Amazon product selection: comprehensive Listing penetration analysis reports, plus all-cat | 1,081 | Claude Code | 1 | 2,133 tok |
| boyter/cs codespelunker - CLI code search tool that understands code structure and ranks results by | 1,080 | Claude Code | 1 | 1,022 tok |
| northword/zotero-format-metadata Linter for Zotero. A plugin for Zotero to format item metadata. Shortcut to set title rich | 1,079 | Codex, OpenCode | 1 | 2,265 tok |
| xuzhougeng/wisp-science wispscience.com Open-source, local-first desktop AI research workbench for scientific computing with Pytho | 1,065 | Codex, OpenCode | 1 | 3,077 tok |
| marc-shade/world-intel-mcp 160-tool MCP server for real-time global intelligence from free public APIs: markets, liqu | 1,064 | Claude Code | 1 | 2,836 tok |
| yokingma/SearChat isou.chat Search + Chat = SearChat (AI Chat with Search), supporting OpenAI/Anthropic/VertexAI/Gemin | 1,062 | Claude Code | 1 | 852 tok |
| ranxi2001/zero2Agent onefly.top An agent tutorial website for applying to agent R&D positions at major tech companies, cov | 1,026 | Claude Code, Codex, OpenCode | 9 | 1,535 tok |
| pathintegral-institute/mcpm.sh mcpm.sh CLI MCP package manager & registry for all platforms and all clients. Search & configure M | 1,021 | Claude Code, Gemini CLI | 2 | 213 tok |
| bgauryy/octocode octocode.ai Code research platform for AI agents; find, understand, and prove context across your code | 957 | Claude Code, Codex, OpenCode | 2 | 3,171 tok |
| alexknowshtml/smaug Archive your Twitter/X bookmarks to markdown with AI-powered analysis. Supports Claude Cod | 951 | Claude Code | 1 | — |
| liustack/modsearch liustack.dev 🥇 The strongest free web search plugin for DeepSeek Harness, and the search bridge for ev | 933 | Codex, OpenCode | 1 | 1,983 tok |
| OSU-NLP-Group/GUI-Agents-Paper-List osu-nlp-group.github.io Awesome GUI Agent Paper List | 924 | Claude Code, Codex, OpenCode | 2 | 5,208 tok |
| irsdl/webhacklist irsdl.github.io Archive of the Top 10 Web Hacking Techniques - every nominee since 2006, preserved | 912 | Claude Code, Codex | 15 | 2,504 tok |
| DanielPan12/JobHuntBot Agent-led job application workflow with a local progress-tracking dashboard — works with a | 883 | Codex, OpenCode | 1 | 280 tok |
| superhero-tech/super-brain Product Builder Second Brain - AI Product Heroes Edition 3 | 827 | Claude Code, Codex, OpenCode | 10 | 438 tok |
| shuxiachai/academic-commercialization-agent academic-commercialization-agent.up.railway.app AI multi-agent tool that turns research papers into cited commercialization and tech-trans | 808 | Claude Code, Codex, OpenCode | 2 | 11,330 tok |
| simonw/research Research projects | 798 | Claude Code, Codex, OpenCode | 2 | 309 tok |
| raphaelsty/knowledge knowledge-web.org Online library for AI | 776 | Claude Code | 1 | 1,598 tok |
| runningZ1/union-search-skill Unified search toolkit - a cross-platform content search solution supporting 20+ platforms | 768 | Claude Code, Codex, OpenCode | 2 | 814 tok |
| MigoXLab/dingo dingo.openxlab.org.cn Dingo: A Comprehensive AI Data, Model and Application Quality Evaluation Tool | 766 | Claude Code, Codex, OpenCode | 2 | 3,364 tok |
| yaojingang/geo-citation-lab GEO experiment data reports and a curated GEO/AEO/AI search paper library. | 737 | Codex, OpenCode | 1 | 1,261 tok |
| nominal-io/instro instro.nominal.io An open-source library for hardware test instrumentation | 729 | Claude Code, Codex, GitHub Copilot, OpenCode | 7 | 8,057 tok |