ammawla/encode-toolkit

MCP server and Claude Code plugin for the ENCODE Project: search, download and analyze ChIP-seq, ATAC-seq, RNA-seq, WGBS, Hi-C and CUT&RUN data with 20 tools, 47 skills and 7 Nextflow pipelines

22Stars on the repository
71Mods indexed here, across every type
1mo agoLast push, which is what freshness is scored on
AGPL-3.0Licence, which decides whether bodies are shown

encode-data-quality

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ammawla/encode-toolkit

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ENCODE data quality standards and QC thresholds for genomics experiments.

not rated 22 +1 1mo ago A 0 tokens AGPL-3.0

encode-file-formats

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ammawla/encode-toolkit

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ENCODE file format conventions and genomics data handling best practices.

not rated 22 +1 1mo ago A 0 tokens AGPL-3.0

encode-provenance

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ammawla/encode-toolkit

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Data provenance and reproducibility standards for ENCODE analysis workflows.

not rated 22 +1 1mo ago A 0 tokens AGPL-3.0

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