00-enzymeexplorer

00-enzymeexplorer is a cursor rule for Cursor from pluskal-lab/EnzymeExplorer. It costs 130 tokens per session, scanned A, original, MIT.

A baseline set of repository rules for an enzyme-analysis project. It tells coding agents to follow the project's guidance, avoid generated files, keep changes focused, and match the expected checks.

In plain words
What is it for?
Use it when modifying the project, deciding which files to inspect, updating command-line help, or preparing a change for review.
Why use it?
It prevents accidental edits to build outputs and unrelated code. It also reduces review problems by requiring changes to fit the project's formatting, linting, type-checking, and documentation expectations.

Cursor rule for Cursor

Written for Cursor: installed under .cursor/. Also seen: mentions AGENTS.md.

Good fit Use it when modifying the project, deciding which files to inspect, updating command-line help, or preparing a change for review.

Compare 6 cursor rules from other repositories ↓
Install with agentmods
npx agentmods add rules/pluskal-lab/enzymeexplorer/00-enzymeexplorer
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Clone the repo
git clone --depth 1 https://github.com/pluskal-lab/EnzymeExplorer

Made for: Cursor.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for 00-enzymeexplorer

README.md
[![agentmods](https://agentmods.dev/badge/rules/pluskal-lab/enzymeexplorer/00-enzymeexplorer/github.svg)](https://agentmods.dev/rules/pluskal-lab/enzymeexplorer/00-enzymeexplorer)
Your own site
<a href="https://agentmods.dev/rules/pluskal-lab/enzymeexplorer/00-enzymeexplorer"><img src="https://agentmods.dev/badge/rules/pluskal-lab/enzymeexplorer/00-enzymeexplorer/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for 00-enzymeexplorer

Your own site · 80×15
<a href="https://agentmods.dev/rules/pluskal-lab/enzymeexplorer/00-enzymeexplorer"><img src="https://agentmods.dev/badge/rules/pluskal-lab/enzymeexplorer/00-enzymeexplorer.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 130 This file is loaded in full into every session.
When invoked 130 The same file — it is already loaded in full.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00130 $0.00130
Opus 5.5 $0.00052 $0.00052
Sonnet 5.5 $0.00026 $0.00026
Haiku 4.5 $0.00013 $0.00013

Measured 23d ago against content hash 2795c159a7fa, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

00-enzymeexplorer scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 23d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.cursor/rules/00-enzymeexplorer.mdc · 18 lines

What it actually says

Follow AGENTS.md in the repo root.

Do NOT open, summarize, or modify generated artifacts (especially anything under outputs/ or build/). If a task asks for results from generated files, ask for the specific small snippet needed instead of scanning directories.

When making changes:

  • Keep diffs minimal and targeted.
  • Don’t reformat unrelated code.
  • Prefer updating docs/help text when CLI behavior changes.

Before suggesting a PR-ready change, ensure checks align with the repo’s CI expectations (black/flake8/pylint/mypy).

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 23d ago First seen · 18 lines · 130 tokens per session scan A 2795c159a7fa

Subscribe to this mod's changes

00-enzymeexplorer is a cursor rule published in the GitHub repository pluskal-lab/EnzymeExplorer (18 stars, last pushed 1mo ago), licensed MIT. It adds 130 tokens to every session, about $0.0005 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-10-02.