claw-semantic-sim

claw-semantic-sim is a skill for Claude Code from aAAaqwq/AGI-Super-Team. It costs 21 tokens per session (1,523 once invoked), scanned A, original, MIT.

A research tool that compares disease literature using PubMedBERT, an AI language model trained on biomedical text. It turns PubMed abstracts into numerical representations and measures how disease research is connected, isolated, varied, or changing over time.

In plain words
What is it for?
Use it to analyze a list of diseases, calculate four literature-comparison measures, and create figures showing the results.
Why use it?
It makes large collections of biomedical abstracts easier to compare systematically. It can reveal diseases with isolated research or possible links to work on other diseases.

Skill for Claude Code

Written for Claude Code: shipped in a Claude Code plugin. Also seen: built for openclaw.

Part of the agi-super-team plugin — 194 skills, 1 agent shipped together

Good fit Use it to analyze a list of diseases, calculate four literature-comparison measures, and create figures showing the results.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/aaaaqwq/agi-super-team/claw-semantic-sim
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add aAAaqwq/AGI-Super-Team --skill claw-semantic-sim
Clone the repo
git clone --depth 1 https://github.com/aAAaqwq/AGI-Super-Team

Made for: Claude Code.

Or install agi-super-team, the plugin that ships this one along with the rest of its 194 skills, 1 agent.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for claw-semantic-sim

README.md
[![agentmods](https://agentmods.dev/badge/skills/aaaaqwq/agi-super-team/claw-semantic-sim/github.svg)](https://agentmods.dev/skills/aaaaqwq/agi-super-team/claw-semantic-sim)
Your own site
<a href="https://agentmods.dev/skills/aaaaqwq/agi-super-team/claw-semantic-sim"><img src="https://agentmods.dev/badge/skills/aaaaqwq/agi-super-team/claw-semantic-sim/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for claw-semantic-sim

Your own site · 80×15
<a href="https://agentmods.dev/skills/aaaaqwq/agi-super-team/claw-semantic-sim"><img src="https://agentmods.dev/badge/skills/aaaaqwq/agi-super-team/claw-semantic-sim.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 21 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,523 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00021 $0.01523
Opus 5 $0.00010 $0.00762
Sonnet 5 $0.00004 $0.00305
Haiku 4.5 $0.00002 $0.00152

Measured 5d ago against content hash 4f2f53d1cb81, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-10, from the pricing page.

Security

Grade A, and why

claw-semantic-sim scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/claw-semantic-sim/SKILL.md · 163 lines

How it starts

The opening of the file, as written. The whole thing — 163 lines — stays where its author put it; the contents beside it link to each section on GitHub.

🦖 Semantic Similarity Index

Measure how isolated or connected disease research is across the global biomedical literature, using PubMedBERT embeddings on PubMed abstracts spanning 175 GBD diseases.

What it does

  1. Takes a disease list (GBD taxonomy) as input
  2. Retrieves PubMed abstracts (2000-2025) for each disease with quality filtering
  3. Generates 768-dimensional PubMedBERT embeddings for every abstract
  4. Computes four semantic equity metrics per disease:
    • Semantic Isolation Index (SII): average cosine distance to k-nearest disease neighbours; higher = more isolated, less connected research
    • Knowledge Transfer Potential (KTP): cross-disease centroid similarity; higher = more potential for research spillover
    • Research Clustering Coefficient (RCC): within-disease embedding variance; higher = more diverse research approaches
    • Temporal Semantic Drift: cosine distance between yearly centroids; measures how research focus evolves
  5. Generates publication-quality multi-panel figures:
    • Panel A: Semantic isolation by disease category (boxplot)
    • Panel B: Top 20 most semantically isolated diseases (bar chart, NTD/Global South colour-coded)
    • Panel C: Semantic isolation vs research volume (scatter with regression)
    • Panel D: NTD vs non-NTD significance test (Welch's t-test, Cohen's d)
  6. Produces a markdown report with all metrics, rankings, and reproducibility bundle

Why this exists

If you ask ChatGPT to "measure research neglect for diseases," it will:

  • Not know which embedding model to use for biomedical text
  • Hallucinate metrics that sound plausible but have no methodological grounding
  • Skip quality filtering (year coverage, abstract coverage, minimum papers)
  • Not handle MPS acceleration or checkpointed batch processing
  • Produce a single scatter plot with no disease classification

This skill encodes the correct methodological decisions:

  • Uses PubMedBERT (the gold-standard biomedical language model)
  • Fetches from PubMed with exponential backoff and NCBI rate limiting
  • Quality filters: year coverage >= 70%, abstract coverage >= 95%, minimum 50 papers
  • Batch embedding with Apple MPS acceleration and CPU fallback
  • Checkpointed processing (resume after interruption)
  • HDF5 storage with gzip compression and SHA-256 checksums
  • Classification against WHO NTD list and Global South priority diseases
  • Statistical significance testing (Welch's t-test, Cohen's d)

Read the full file on GitHub · 163 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 5d ago First seen · 163 lines · 21 tokens per session scan A 4f2f53d1cb81

Subscribe to this mod's changes

claw-semantic-sim is a skill published in the GitHub repository aAAaqwq/AGI-Super-Team (91 stars, last pushed yesterday), licensed MIT. It adds 21 tokens to every session and 1,523 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-05.

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