incubation-loop

An ongoing reasoning process that revisits open questions over multiple runs. It applies different analysis methods, such as comparing explanations, updating beliefs with evidence, arguing the strongest opposing view, and linking ideas across fields.

In plain words
What is it for?
Use it to work through unresolved topics, test competing explanations, refine conclusions, and record the development of your thinking over time.
Why use it?
It helps prevent important questions from being treated as solved after one pass. The process keeps its notes and progress so later runs can continue where earlier ones stopped.

Skill for Claude CodeCodex

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/abilityai/cornelius/incubation-loop
Any agent
npx skills add Abilityai/cornelius --skill incubation-loop
Clone the repo
git clone --depth 1 https://github.com/Abilityai/cornelius

Made for: Claude Code, Codex.

Per session 42 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 9,254 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00042 $0.09254
Opus 5 $0.00021 $0.04627
Sonnet 5 $0.00008 $0.01851
Haiku 4.5 $0.00004 $0.00925

Measured 3d ago against content hash 415f26e4a592, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

incubation-loop scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 3d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude/skills/incubation-loop/SKILL.md · 466 lines

How it starts

The opening of the file, as written. The whole thing — 466 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Incubation Loop

ℹ️ First, set expectations: before anything else, print one short line with this skill's version and its most recent change — the top entry of metadata.changelog above — e.g. incubation-loop vX.Y — recent: <summary>. Then proceed.

Autonomous thinking engine. Each scheduled run advances all active thinking topics by one analytical move, persisting reasoning state across runs until convergence.

Purpose

Continuous intellectual iteration on open questions. Uses a rotating set of research-validated analytical moves (ACH, Bayesian updating, dialectical steelmanning, cross-domain bridging) to build toward well-grounded conclusions - without requiring human presence in each cycle.

Design principle: Each run does one move per topic. Depth accumulates across runs. No single run tries to "solve" the question.

State Dependencies

Source Location Read Write Description
Thinking Registry Brain/05-Meta/Thinking/THINKING-REGISTRY.md Active topics + status
Thinking Files Brain/05-Meta/Thinking/[topic-slug].md Per-topic reasoning journal
Local Brain Search resources/local-brain-search/ Semantic search for KB evidence
Permanent Notes Brain/02-Permanent/ Primary evidence source
Session Changelogs Brain/05-Meta/Changelogs/ Run log

Prerequisites

  • Registry file exists at Brain/05-Meta/Thinking/THINKING-REGISTRY.md
  • At least one active topic seeded (see Seeding section below) - or none, in which case the Starvation Floor (Step 1a) self-seeds one from the watched domains
  • Local Brain Search index up-to-date

Composes

  • /domain-watch - invoked by the Starvation Floor (Step 1a) when the active queue is empty, to formulate and activate a new topic from the domains under surveillance. Called by its unversioned name so its fixes propagate.

Process

Step 1: Get Date and Load Registry

Read the full file on GitHub · 466 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 3d ago First seen · 466 lines · 42 tokens per session scan A 415f26e4a592

Subscribe to this mod's changes

incubation-loop is a skill published in the GitHub repository Abilityai/cornelius (104 stars, last pushed 10d ago), licensed MIT. It adds 42 tokens to every session and 9,254 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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