latchbio-integration

latchbio-integration is a skill for Claude Code from agentlas-ai/agentlas-desktop. It costs 76 tokens per session (2,242 once invoked), scanned A, a copy of latchbio-integration, Apache-2.0.

A toolkit for creating and running bioinformatics workflows on Latch, a platform for executing research data pipelines. It covers Python, Nextflow, and Snakemake workflows, data storage, registration, and monitoring.

In plain words
What is it for?
Use it to package and register pipelines, configure CPU, memory, storage, GPUs, retries, and timeouts, manage Latch Data and Registry records, and launch or monitor runs.
Why use it?
It brings workflow setup, resource settings, data movement, debugging, and execution into one documented process instead of requiring separate tools and manual steps.

Skill for Claude Code

Written for Claude Code: allowed-tools in frontmatter.

Good fit Use it to package and register pipelines, configure CPU, memory, storage, GPUs, retries, and timeouts, manage Latch Data and Registry records, and launch or monitor runs.

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Install with agentmods
npx agentmods add skills/agentlas-ai/agentlas-desktop/latchbio-integration
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add agentlas-ai/agentlas-desktop --skill latchbio-integration
Clone the repo
git clone --depth 1 https://github.com/agentlas-ai/agentlas-desktop

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for latchbio-integration

README.md
[![agentmods](https://agentmods.dev/badge/skills/agentlas-ai/agentlas-desktop/latchbio-integration/github.svg)](https://agentmods.dev/skills/agentlas-ai/agentlas-desktop/latchbio-integration)
Your own site
<a href="https://agentmods.dev/skills/agentlas-ai/agentlas-desktop/latchbio-integration"><img src="https://agentmods.dev/badge/skills/agentlas-ai/agentlas-desktop/latchbio-integration/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for latchbio-integration

Your own site · 80×15
<a href="https://agentmods.dev/skills/agentlas-ai/agentlas-desktop/latchbio-integration"><img src="https://agentmods.dev/badge/skills/agentlas-ai/agentlas-desktop/latchbio-integration.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 76 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,242 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 1 finding. A grade says what 26 rules found in the file — not that it is safe.
Origin 100% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00076 $0.02242
Opus 5.5 $0.00030 $0.00897
Sonnet 5.5 $0.00015 $0.00448
Haiku 4.5 $0.00008 $0.00224

Measured 1mo ago against content hash f9607ea51cec, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

latchbio-integration scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

The scan reads SKILL.md. This mod also ships 1 executable file (scripts/inspect_latch_sdk.py), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Runs shell commandslowCapability

Expected in a hook, worth knowing in a rule or an instructions file.

with `subprocess.run(..., check=True)`.
Origin

This is a copy

100% identical to latchbio-integration — 34 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

plugins/agentlas-science-skills/skills/latchbio-integration/SKILL.md · 245 lines

How it starts

The opening of the file, as written. The whole thing — 245 lines — stays where its author put it; the contents beside it link to each section on GitHub.

LatchBio Integration

Current Baseline

This skill targets Latch SDK 2.76.8, released July 10, 2026. The package metadata supports Python 3.9–3.12 and declares Python 3.9+.

Treat the installed package and its changelog as authoritative when a guide disagrees with the SDK. Some Latch guides retain older Python ranges or compatibility-specific pre-release pins, especially the Snakemake v2 tutorial. Never combine commands or imports from different tracks without checking their version requirements.

When to Use

Use this skill to:

  • Create or maintain Python SDK workflows and task graphs
  • Package and register Python, Nextflow, or Snakemake pipelines
  • Configure task CPU, memory, storage, GPU, caching, retries, and timeouts
  • Work with Latch Data through LPath, LatchFile, LatchDir, or the CLI
  • Read or update Latch Registry projects, tables, and records
  • Design workflow forms, launch plans, samplesheets, messages, and result links
  • Stage and debug workflow images with latch register --staging and latch develop
  • Launch and monitor workflows through Python or Latch MCP
  • Discover and use ready-to-run Latch workflows

Route to the Right Reference

Read only the references needed for the task:

Need Reference
Python workflows, tasks, maps, conditions, caching references/workflow-creation.md
LPath, legacy file types, Latch URLs, data CLI references/data-management.md
Registry reads, transactions, samplesheets references/registry.md
CPU, memory, storage, GPU, dynamic resources references/resource-configuration.md
Nextflow and Snakemake packaging references/nextflow-snakemake.md
Metadata, forms, launch plans, messages, automations references/ui-and-automation.md
Registration, development, execution, monitoring references/operations-and-debugging.md
Ready-to-use workflows and latch.verified references/verified-workflows.md
Remote MCP setup and tool workflow references/latch-mcp.md

Read the full file on GitHub · 245 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago First seen · 245 lines · 76 tokens per session scan A f9607ea51cec

Subscribe to this mod's changes

latchbio-integration is a skill published in the GitHub repository agentlas-ai/agentlas-desktop (6 stars, last pushed yesterday), licensed Apache-2.0. It adds 76 tokens to every session and 2,242 once invoked, about $0.0003 per session on Opus 5.5. A static security scan graded it A with 1 finding (runs shell commands). It is 100% identical to latchbio-integration, differing in 34 lines, and is treated as a copy.

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