Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add agentlas-ai/agentlas-desktop --skill omero-integrationgit clone --depth 1 https://github.com/agentlas-ai/agentlas-desktopWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/agentlas-ai/agentlas-desktop/omero-integration)<a href="https://agentmods.dev/skills/agentlas-ai/agentlas-desktop/omero-integration"><img src="https://agentmods.dev/badge/skills/agentlas-ai/agentlas-desktop/omero-integration/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/agentlas-ai/agentlas-desktop/omero-integration"><img src="https://agentmods.dev/badge/skills/agentlas-ai/agentlas-desktop/omero-integration.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00065 | $0.02465 |
| Opus 5.5 | $0.00026 | $0.00986 |
| Sonnet 5.5 | $0.00013 | $0.00493 |
| Haiku 4.5 | $0.00006 | $0.00247 |
Grade A, and why
omero-integration scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
This is a copy
100% identical to omero-integration — 23 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.
How it starts
The opening of the file, as written. The whole thing — 240 lines — stays where its author put it; the contents beside it link to each section on GitHub.
OMERO Integration
Use current OME documentation and the smallest explicit data scope. OMERO data may contain unpublished images, identifiers, annotations, original files, and derived measurements.
Verified Baseline
This skill was refreshed on 2026-07-23:
- OMERO.server 5.6.18 (May 2026) is the current documented stable server.
- It was tested by OME with OMERO.py/omero-py 5.22.1 and OMERO.web 5.31.0.
omero-py==5.22.1requires Python 3.10 or newer. The OMERO support matrix supports 3.10 and 3.11, recommends 3.12, and still labels 3.13/3.14 “upcoming.”- OMERO 5.6 uses IcePy 3.6, with 3.6.5 prebuilt client wheels documented for Python versions through 3.12.
The pin above is a reproducible skill snapshot, not a promise that every
OMERO.server release accepts that client. For another server version, consult
its release entry and use the OMERO.py version tested with it. See
references/sources.md.
Operating Contract
- Start with local validation or a dry run. Do not connect until the user has selected the host, group, object type, IDs, and result limit.
- Read credentials only from the named
OMERO_*variables in the frontmatter. Never search parent directories or load.envfiles. - Never place a password or session key in command arguments, source code, output JSON, logs, tracebacks, or chat. A session key is a bearer credential.
- Default to
secure=True. OMERO encrypts login by default, but post-login data and the session ID may otherwise travel unencrypted.secure=Truedoes not by itself guarantee certificate hostname verification. - Bound every list, page, ROI, shape, annotation, table row, pixel plane, and local file scan. Do not turn an object request into a group-wide or cross-group export without explicit approval.
- Treat all writes separately: annotation/link creation, rendering-default saves, image creation, imports, script uploads, table writes, ownership or group changes, and deletion require an exact reviewed target.
- Close
BlitzGateway, table handles, raw stores, thumbnail stores, rendering engines, script clients, and other stateful services infinallyblocks or documented context-manager patterns. - Never connect to a real server merely to “test” examples.
What ships with it
14 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
- references/advanced.md 9.4 KB
- references/connection.md 9.7 KB
- references/data_access.md 9.3 KB
- references/image_processing.md 7.7 KB
- references/metadata.md 8.8 KB
- references/rois.md 8.2 KB
- references/scripts.md 8.2 KB
- references/sources.md 8.1 KB
- references/tables.md 8.3 KB
- scripts/export_image_metadata.py 16 KB runs code
- scripts/inventory.py 8.2 KB runs code
- scripts/omero_common.py 14 KB runs code
- scripts/plan_transfer.py 12 KB runs code
- scripts/validate_config.py 4.0 KB runs code
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 1mo ago First seen · 240 lines · 65 tokens per session scan A 242ba431ebc6
omero-integration is a skill published in the GitHub repository agentlas-ai/agentlas-desktop (6 stars, last pushed yesterday), licensed Apache-2.0. It adds 65 tokens to every session and 2,465 once invoked, about $0.0003 per session on Opus 5.5. A static security scan graded it A with 0 findings. It is 100% identical to omero-integration, differing in 23 lines, and is treated as a copy.
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