bioclaw-hub-spatial-transcriptomics

bioclaw-hub-spatial-transcriptomics is a skill for OpenCode from ai4nucleome/BioMaster. It costs 34 tokens per session (254 once invoked), scanned A, original, no licence file.

A workflow for analysing spatial transcriptomics data, which records gene activity together with where cells are located in tissue. It covers preparation, tissue-region detection, cell-type mixture estimates, neighbourhood analysis, and spatial maps.

In plain words
What is it for?
Use it to preprocess spatial transcriptomics data, identify tissue domains, estimate cell-type composition, study nearby-cell relationships, and create maps for reports or papers.
Why use it?
It helps organise the steps needed to turn location-aware gene data into interpretable tissue results. It also covers common follow-up analyses instead of leaving them as separate, disconnected tasks.

Skill for OpenCode

Written for OpenCode: installed under .opencode/.

Good fit Use it to preprocess spatial transcriptomics data, identify tissue domains, estimate cell-type composition, study nearby-cell relationships, and create maps for reports or papers.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/ai4nucleome/biomaster/bioclaw-hub-spatial-transcriptomics
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add ai4nucleome/BioMaster --skill bioclaw-hub-spatial-transcriptomics
Clone the repo
git clone --depth 1 https://github.com/ai4nucleome/BioMaster

Made for: OpenCode.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for bioclaw-hub-spatial-transcriptomics

README.md
[![agentmods](https://agentmods.dev/badge/skills/ai4nucleome/biomaster/bioclaw-hub-spatial-transcriptomics/github.svg)](https://agentmods.dev/skills/ai4nucleome/biomaster/bioclaw-hub-spatial-transcriptomics)
Your own site
<a href="https://agentmods.dev/skills/ai4nucleome/biomaster/bioclaw-hub-spatial-transcriptomics"><img src="https://agentmods.dev/badge/skills/ai4nucleome/biomaster/bioclaw-hub-spatial-transcriptomics/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for bioclaw-hub-spatial-transcriptomics

Your own site · 80×15
<a href="https://agentmods.dev/skills/ai4nucleome/biomaster/bioclaw-hub-spatial-transcriptomics"><img src="https://agentmods.dev/badge/skills/ai4nucleome/biomaster/bioclaw-hub-spatial-transcriptomics.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 34 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 254 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00034 $0.00254
Opus 5.5 $0.00014 $0.00102
Sonnet 5.5 $0.00007 $0.00051
Haiku 4.5 $0.00003 $0.00025

Measured 2mo ago against content hash 865daad8f876, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

bioclaw-hub-spatial-transcriptomics scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.opencode/bioskills/bioclaw-hub-spatial-transcriptomics/SKILL.md · 15 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Files

What ships with it

3 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2mo ago First seen · 15 lines · 34 tokens per session scan A 865daad8f876

Subscribe to this mod's changes

bioclaw-hub-spatial-transcriptomics is a skill published in the GitHub repository ai4nucleome/BioMaster (118 stars, last pushed 3mo ago), with no licence file. It adds 34 tokens to every session and 254 once invoked, about $0.0001 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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