bioskills-normalization

bioskills-normalization is a skill for OpenCode from ai4nucleome/BioMaster. It costs 51 tokens per session (192 once invoked), scanned A, original, no licence file.

A set of methods for putting RNA-seq count data on a comparable scale before analysis. It includes methods for removing low-information genes, adjusting for sample size and technical bias, and preparing data for visualisation.

In plain words
What is it for?
It is for preparing bulk RNA-seq and single-cell RNA-seq data, calculating TPM, correcting GC or length bias, and making variance-stabilised plots.
Why use it?
Raw sequencing counts can differ because of library size, gene length, GC content, or other technical effects. Normalisation reduces these differences so biological patterns are easier to compare.

Skill for OpenCode

Written for OpenCode: installed under .opencode/.

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/ai4nucleome/biomaster/bioskills-normalization
Any agent
npx skills add ai4nucleome/BioMaster --skill bioskills-normalization
Clone the repo
git clone --depth 1 https://github.com/ai4nucleome/BioMaster

Made for: OpenCode.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for bioskills-normalization

README.md
[![agentmods](https://agentmods.dev/badge/skills/ai4nucleome/biomaster/bioskills-normalization.svg)](https://agentmods.dev/skills/ai4nucleome/biomaster/bioskills-normalization)
Your own site
<a href="https://agentmods.dev/skills/ai4nucleome/biomaster/bioskills-normalization"><img src="https://agentmods.dev/badge/skills/ai4nucleome/biomaster/bioskills-normalization.svg" alt="Measured on agentmods" height="20"></a>
Per session 51 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 192 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00051 $0.00192
Opus 5 $0.00026 $0.00096
Sonnet 5 $0.00010 $0.00038
Haiku 4.5 $0.00005 $0.00019

Measured 6d ago against content hash f9ed229903cf, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-06, from the pricing page.

Security

Grade A, and why

bioskills-normalization scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 6d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.opencode/bioskills/bioskills-normalization/SKILL.md · 15 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Files

What ships with it

3 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 6d ago First seen · 15 lines · 51 tokens per session scan A f9ed229903cf

Subscribe to this mod's changes

bioskills-normalization is a skill published in the GitHub repository ai4nucleome/BioMaster (112 stars, last pushed 1mo ago), with no licence file. It adds 51 tokens to every session and 192 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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