uniprot_database

uniprot_database is a skill for Claude Code, Codex from ai4protein/VenusFactory2. It costs 122 tokens per session (1,119 once invoked), scanned A, original, no licence file.

A search and retrieval tool for UniProt, a database of protein sequences, functions, species information, and links to other biological databases. It can retrieve entries and FASTA sequences, map identifiers, fetch metadata, and run queries against UniProt’s SPARQL data service.

In plain words
What is it for?
Use it to search for proteins, retrieve sequences and metadata, map PDB and UniProt identifiers, follow database cross-references, or query UniProt data with SPARQL.
Why use it?
It helps you identify and describe a protein from a UniProt accession or connect the same protein across resources such as PDB. This avoids manually copying sequence and annotation details between databases.

Skill for Claude CodeCodex

Which agent this was written for is unclear — body not stored (licence); the path alone says nothing.

Good fit Use it to search for proteins, retrieve sequences and metadata, map PDB and UniProt identifiers, follow database cross-references, or query UniProt data with SPARQL.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/ai4protein/venusfactory2/uniprot_database
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add ai4protein/VenusFactory2 --skill uniprot_database
Clone the repo
git clone --depth 1 https://github.com/ai4protein/VenusFactory2

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for uniprot_database

README.md
[![agentmods](https://agentmods.dev/badge/skills/ai4protein/venusfactory2/uniprot_database/github.svg)](https://agentmods.dev/skills/ai4protein/venusfactory2/uniprot_database)
Your own site
<a href="https://agentmods.dev/skills/ai4protein/venusfactory2/uniprot_database"><img src="https://agentmods.dev/badge/skills/ai4protein/venusfactory2/uniprot_database/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for uniprot_database

Your own site · 80×15
<a href="https://agentmods.dev/skills/ai4protein/venusfactory2/uniprot_database"><img src="https://agentmods.dev/badge/skills/ai4protein/venusfactory2/uniprot_database.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 122 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,119 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00122 $0.01119
Opus 5 $0.00061 $0.00560
Sonnet 5 $0.00024 $0.00224
Haiku 4.5 $0.00012 $0.00112

Measured 9d ago against content hash a346862ab5e7, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-09, from the pricing page.

Security

Grade A, and why

uniprot_database scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

src/agent/skills/uniprot_database/SKILL.md · 73 lines

The source is not reproduced here

A licence we could not identify

The repository carries a LICENSE file, but it is custom or dual enough that GitHub cannot name it and neither can this catalogue. Unknown terms are not permission, so the body is not copied here. Read the licence at the source and decide for yourself.

Read it on GitHub

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 9d ago First seen · 73 lines · 122 tokens per session scan A a346862ab5e7

Subscribe to this mod's changes

uniprot_database is a skill published in the GitHub repository ai4protein/VenusFactory2 (248 stars, last pushed 1mo ago), with no licence file. It adds 122 tokens to every session and 1,119 once invoked, about $0.0006 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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