osp-query-agent

osp-query-agent is a skill for Claude Code, Codex from amirkiarafiei/open-scholar-peer. It costs 73 tokens per session (1,184 once invoked), scanned A, original, MIT.

A research-paper review workflow that asks targeted questions about weaknesses in a paper and gathers checked answers. bioRxiv is an online archive where researchers share biology papers before formal journal review; this workflow is designed for similar scholarly analysis.

In plain words
What is it for?
Use it to create question-and-answer pairs for review criteria, investigate possible weaknesses, and support a broader paper assessment.
Why use it?
It turns passive reading into a structured examination of the paper’s claims, methods, and limitations.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one. Also seen: mentions subagents.

Good fit Use it to create question-and-answer pairs for review criteria, investigate possible weaknesses, and support a broader paper assessment.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/amirkiarafiei/open-scholar-peer/osp-query-agent
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add amirkiarafiei/open-scholar-peer --skill osp-query-agent
Clone the repo
git clone --depth 1 https://github.com/amirkiarafiei/open-scholar-peer

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for osp-query-agent

README.md
[![agentmods](https://agentmods.dev/badge/skills/amirkiarafiei/open-scholar-peer/osp-query-agent/github.svg)](https://agentmods.dev/skills/amirkiarafiei/open-scholar-peer/osp-query-agent)
Your own site
<a href="https://agentmods.dev/skills/amirkiarafiei/open-scholar-peer/osp-query-agent"><img src="https://agentmods.dev/badge/skills/amirkiarafiei/open-scholar-peer/osp-query-agent/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for osp-query-agent

Your own site · 80×15
<a href="https://agentmods.dev/skills/amirkiarafiei/open-scholar-peer/osp-query-agent"><img src="https://agentmods.dev/badge/skills/amirkiarafiei/open-scholar-peer/osp-query-agent.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 73 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,184 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00073 $0.01184
Opus 5.5 $0.00029 $0.00474
Sonnet 5.5 $0.00015 $0.00237
Haiku 4.5 $0.00007 $0.00118

Measured 1mo ago against content hash be53f76044e4, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

osp-query-agent scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

extensions/.agent/skills/osp-query-agent/SKILL.md · 98 lines

How it starts

The opening of the file, as written. The whole thing — 98 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Open ScholarPeer — Query Agent (Multi-Aspect Q&A Engine)

You are the Query Agent. Passive reading produces surface-level critique. Your role is to actively interrogate the paper, generating probing questions that target specific weaknesses, then collecting verified answers from the Answer Generator Agent.

You operate in the main thread. The Answer Generator Agent runs as a subagent (or self-reflects on tools without subagent support — see fallback section).

Inputs

  • .brain/session.json — especially qa_criteria[] and qa_pairs_per_criterion
  • .brain/raw/00_review_guidelines.md
  • .brain/raw/01_structured_summary.md
  • .brain/raw/03_domain_narrative.md
  • .brain/raw/04_missing_baselines.md

Loop structure

Read N = session.json.qa_pairs_per_criterion (default 2).

For each criterion in session.json.qa_criteria[]:

  1. Open or initialize .brain/raw/05_qa_<criterion_slug>.md from the template at .agent/defaults/qa_pair_template.md.
  2. Generate exactly N Q&A pairs for this criterion.
  3. For each question: a. Formulate a probing, criterion-specific question grounded in the structured summary, narrative, and missing baselines. b. Delegate to the Answer Generator (subagent or self-reflection — see below). c. Receive (answer, citations, discrepancy_flag). d. Append the Q&A pair to the file.
  4. After N pairs are written, fill in the ## Provenance section.
  5. Update session.json.phases.qa.criteria_progress[<slug>] = "completed".

After all criteria are done:

  • phases.qa.status = "completed"
  • phases.qa.completed_at = <now>
  • resume_from = "review"

Question generation principles

Per criterion, the N questions must collectively probe:

  • Claims — does each claim hold under scrutiny?
  • Comparisons — are the right baselines present, are they fair, are improvements significant?
  • Generalization — would the result hold on a different dataset or scale?
  • Reproducibility — if you wanted to reproduce, what's missing?
  • Hidden assumptions — what does the paper implicitly assume that may not hold?

Read the full file on GitHub · 98 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago Changed be53f76044e4
  2. 1mo ago Changed 9dac229b46c5
  3. 2mo ago First seen · 98 lines · 73 tokens per session scan A 8d87eb37c531

Subscribe to this mod's changes

osp-query-agent is a skill published in the GitHub repository amirkiarafiei/open-scholar-peer (51 stars, last pushed 6d ago), licensed MIT. It adds 73 tokens to every session and 1,184 once invoked, about $0.0003 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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