Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add AndyZhuang/Opentest --skill tooluniverse-multi-omics-integrationgit clone --depth 1 https://github.com/AndyZhuang/OpentestWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/andyzhuang/opentest/tooluniverse-multi-omics-integration)<a href="https://agentmods.dev/skills/andyzhuang/opentest/tooluniverse-multi-omics-integration"><img src="https://agentmods.dev/badge/skills/andyzhuang/opentest/tooluniverse-multi-omics-integration/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/andyzhuang/opentest/tooluniverse-multi-omics-integration"><img src="https://agentmods.dev/badge/skills/andyzhuang/opentest/tooluniverse-multi-omics-integration.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00161 | $0.05959 |
| Opus 5 | $0.00081 | $0.02979 |
| Sonnet 5 | $0.00032 | $0.01192 |
| Haiku 4.5 | $0.00016 | $0.00596 |
Grade A, and why
tooluniverse-multi-omics-integration scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 7d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 704 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Multi-Omics Integration
Coordinate and integrate multiple omics datasets for comprehensive systems biology analysis. This skill orchestrates specialized ToolUniverse skills to perform cross-omics correlation, multi-omics clustering, pathway-level integration, and unified interpretation across molecular layers.
When to Use This Skill
Triggers:
- User has multiple omics datasets (RNA-seq + proteomics, methylation + expression, etc.)
- Requests for integrative multi-omics analysis
- Cross-omics correlation queries (e.g., "How does methylation affect expression?")
- Multi-omics biomarker discovery
- Systems biology questions requiring multiple molecular layers
- Precision medicine applications with multi-omics patient data
- Questions about molecular mechanisms across omics types
Example Questions This Skill Solves:
- "Integrate RNA-seq and proteomics data to find genes with concordant changes"
- "How does promoter methylation correlate with gene expression?"
- "Perform multi-omics clustering to identify patient subtypes"
- "Which pathways are dysregulated across transcriptome, proteome, and metabolome?"
- "Find multi-omics biomarkers for disease classification"
- "Correlate CNV with gene expression to identify dosage effects"
- "Integrate GWAS variants, eQTLs, and expression data"
- "Perform MOFA+ analysis on multi-omics cancer data"
Core Capabilities
| Capability | Description |
|---|---|
| Data Integration | Match samples across omics, handle missing data, normalize scales |
| Cross-Omics Correlation | Correlate features across molecular layers (gene expression vs protein, methylation vs expression) |
| Multi-Omics Clustering | MOFA+, NMF, joint clustering to identify omics-driven subtypes |
| Pathway Integration | Combine omics evidence at pathway level for unified biological interpretation |
| Biomarker Discovery | Identify multi-omics signatures with improved predictive power |
| Skill Coordination | Orchestrate RNA-seq, epigenomics, variant-analysis, protein-interactions, gene-enrichment skills |
| Visualization | Circos plots, integrated heatmaps, network visualizations |
| Reporting | Unified multi-omics reports with cross-layer insights |
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 7d ago First seen · 704 lines · 161 tokens per session scan A 89dbc41940cc
tooluniverse-multi-omics-integration is a skill published in the GitHub repository AndyZhuang/Opentest (22 stars, last pushed 6mo ago), licensed MIT. It adds 161 tokens to every session and 5,959 once invoked, about $0.0008 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.
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