biorxiv-search
145Skill Claude CodeCodex
Search bioRxiv biology preprints with natural language queries. Semantic search powered by Valyu.
not rated 22 6mo ago B 24 tokens
copy · 100% MIT
22Stars on the repository
200Mods indexed here, across every type
6mo agoLast push, which is what freshness is scored on
MITLicence, which decides whether bodies are shown
bioservices
146Skill Claude CodeCodex needs its repo
Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use…
not rated 22 6mo ago A 73 tokens
copy · 80% MIT
Skill Claude Code needs its repo
Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure…
not rated 22 6mo ago A 68 tokens
copy · 89% MIT
Skill Claude CodeCodex
Search ClinicalTrials.gov with natural language queries. Find clinical trials, enrollment, and outcomes using Valyu semantic search.
not rated 22 6mo ago B 28 tokens
copy · 100% MIT
Skill Claude CodeCodex needs its repo
Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.
not rated 22 6mo ago A 47 tokens
copy · 83% MIT
gene-database
150Skill Claude CodeCodex needs its repo
Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenotypes), batch lookups, for gene annotation and functional analysis.
not rated 22 6mo ago A 49 tokens
copy · 89% MIT
geo-database
151Skill Claude CodeCodex
Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.
not rated 22 6mo ago A 47 tokens
copy · 86% MIT
hmdb-database
152Skill Claude CodeCodex
Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.
not rated 22 6mo ago A 46 tokens
copy · 89% MIT
Skill Claude Code needs its repo
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and…
not rated 22 6mo ago A 86 tokens
copy · 86% MIT
Skill Claude CodeCodex
Comprehensive scientific literature search across PubMed, arXiv, bioRxiv, medRxiv. Natural language queries powered by Valyu semantic search.
not rated 22 6mo ago B 35 tokens
copy · 100% MIT
literature
155Skill Claude CodeCodex
Comprehensive academic literature search and synthesis across 15+ sources.
not rated 22 6mo ago A 0 tokens
copy · 98% MIT
Skill Claude CodeCodex
Extracts falsifiable scientific hypotheses (if-then form) from multiple PubMed articles, abstracts, or full texts. Synthesizes supporting evidence, contradictions, and experimental validation suggestions into a structured Markdown report for hypothesis-driven research planning.
not rated 22 6mo ago A 54 tokens
original MIT
medrxiv-search
157Skill Claude CodeCodex
Search medRxiv medical preprints with natural language queries. Powered by Valyu semantic search.
not rated 22 6mo ago B 24 tokens
copy · 100% MIT
Skill Claude CodeCodex
Query and analyze scholarly literature using the OpenAlex database. This skill should be used when searching for academic papers, analyzing research trends, finding works by authors or institutions, tracking citations, discovering open access publications, or conducting bibliometric analysis across 240M+ scholarly…
not rated 22 6mo ago A 76 tokens
copy · 86% MIT
patents-search
159Skill Claude CodeCodex
Search global patents with natural language queries. Prior art, patent landscapes, and innovation tracking via Valyu.
not rated 22 6mo ago B 25 tokens
copy · 100% MIT
pdb-database
160Skill Claude CodeCodex
Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and drug discovery.
not rated 22 6mo ago A 49 tokens
copy · 95% MIT
Skill Claude CodeCodex needs its repo
Perform AI-powered web searches with real-time information using Perplexity models via LiteLLM and OpenRouter. This skill should be used when conducting web searches for current information, finding recent scientific literature, getting grounded answers with source citations, or accessing information beyond the model…
not rated 22 6mo ago A 98 tokens
copy · 91% MIT
pubmed-database
162Skill Claude CodeCodex
Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API implementations.
not rated 22 6mo ago A 58 tokens
copy · 84% MIT
pubmed-search
163Skill Claude CodeCodex
Search PubMed biomedical literature with natural language queries powered by Valyu semantic search. Full-text access, integrate into your AI projects.
not rated 22 6mo ago B 30 tokens
copy · 86% MIT
research-grants
164Skill Claude Code needs its repo
Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review criteria, budget preparation, broader impacts, significance statements, innovation narratives, and compliance with submission requirements.
not rated 22 6mo ago A 48 tokens
copy · 92% MIT
research-lookup
165Skill Claude Code needs its repo
Look up current research information using Perplexity Sonar Pro Search or Sonar Reasoning Pro models through OpenRouter. Automatically selects the best model based on query complexity. Search academic papers, recent studies, technical documentation, and general research information with citations.
not rated 22 6mo ago A 55 tokens
copy · 91% MIT
review-writing
166Skill Claude CodeCodex
A structured method for writing literature reviews, which summarize and compare research on a topic. It breaks the work into sections that are searched, organized, written, cited, and saved separately.
not rated 22 6mo ago A 0 tokens
copy · 100% MIT
Skill Claude CodeCodex
Conduct comprehensive literature research with target disambiguation, evidence grading, and structured theme extraction. Creates a detailed report with mandatory completeness checklist, biological model synthesis, and testable hypotheses. For biological targets, resolves official IDs (Ensembl/UniProt), synonyms…
not rated 22 6mo ago A 121 tokens
original MIT
uspto-database
168Skill Claude CodeCodex
Access USPTO APIs for patent/trademark searches, examination history (PEDS), assignments, citations, office actions, TSDR, for IP analysis and prior art searches.
not rated 22 6mo ago A 40 tokens
copy · 94% MIT
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: